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Routines to handle family data with a pedigree object. The initial purpose was to create correlation structures that describe family relationships such as kinship and identity-by-descent, which can be used to model family data in mixed effects models, such as in the coxme function. Also includes a tool for pedigree drawing which is focused on producing compact layouts without intervention. Recent additions include utilities to trim the pedigree object with various criteria, and kinship for the X chromosome.
| Version: | 1.9.6.1 |
| Depends: | R (≥ 3.6.0), Matrix, quadprog |
| Imports: | graphics, stats, methods, knitr |
| Published: | 2024-03-24 |
| DOI: | 10.32614/CRAN.package.kinship2 |
| Author: | Jason Sinnwell [aut, cre], Terry Therneau [aut], Daniel Schaid [ctb], Elizabeth Atkinson [ctb], Carly Mester [ctb] |
| Maintainer: | Jason Sinnwell <sinnwell.jason at mayo.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://cran.r-project.org/package=kinship2 |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| In views: | Agriculture, MixedModels |
| CRAN checks: | kinship2 results |
| Reference manual: | kinship2.pdf |
| Vignettes: |
Pedigree_plot_alignment_details Kinship_Matrix_Code_Details Pedigree_Examples Pedigree_constructor_details Pedigree_Plot_Details |
| Package source: | kinship2_1.9.6.1.tar.gz |
| Windows binaries: | r-devel: kinship2_1.9.6.1.zip, r-release: kinship2_1.9.6.1.zip, r-oldrel: kinship2_1.9.6.1.zip |
| macOS binaries: | r-release (arm64): kinship2_1.9.6.1.tgz, r-oldrel (arm64): kinship2_1.9.6.1.tgz, r-release (x86_64): kinship2_1.9.6.1.tgz, r-oldrel (x86_64): kinship2_1.9.6.1.tgz |
| Old sources: | kinship2 archive |
| Reverse depends: | FamAgg, Familias, GESE, pedgene |
| Reverse imports: | BGmisc, FamEvent, famSKATRC, fat2Lpoly, GENLIB, LCAextend, Mega2R, MESS, optiSel, paramlink, pedtools, pedtricks, ribd, RVS, skater |
| Reverse suggests: | coxme, gap, Mangrove, pbatR, sequoia, simfam |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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