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pedtools: Creating and Working with Pedigrees and Marker Data

A comprehensive collection of tools for creating, manipulating and visualising pedigrees and genetic marker data. Pedigrees can be read from text files or created on the fly with built-in functions. A range of utilities enable modifications like adding or removing individuals, breaking loops, and merging pedigrees. An online tool for creating pedigrees interactively, based on 'pedtools', is available at <https://magnusdv.shinyapps.io/quickped>. 'pedtools' is the hub of the 'pedsuite', a collection of packages for pedigree analysis. A detailed presentation of the 'pedsuite' is given in the book 'Pedigree Analysis in R' (Vigeland, 2021, ISBN:9780128244302).

Version: 2.7.1
Depends: R (≥ 4.1)
Imports: kinship2, pedmut
Suggests: igraph, kableExtra, knitr, rmarkdown, testthat
Published: 2024-09-08
DOI: 10.32614/CRAN.package.pedtools
Author: Magnus Dehli Vigeland ORCID iD [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland at medisin.uio.no>
License: GPL-3
URL: https://github.com/magnusdv/pedtools, https://magnusdv.github.io/pedsuite/
NeedsCompilation: no
Language: en-GB
Citation: pedtools citation info
Materials: README NEWS
CRAN checks: pedtools results

Documentation:

Reference manual: pedtools.pdf
Vignettes: Introduction to the pedtools package (source, R code)

Downloads:

Package source: pedtools_2.7.1.tar.gz
Windows binaries: r-devel: pedtools_2.7.1.zip, r-release: pedtools_2.7.1.zip, r-oldrel: pedtools_2.7.1.zip
macOS binaries: r-release (arm64): pedtools_2.7.1.tgz, r-oldrel (arm64): pedtools_2.7.1.tgz, r-release (x86_64): pedtools_2.7.1.tgz, r-oldrel (x86_64): pedtools_2.7.1.tgz
Old sources: pedtools archive

Reverse dependencies:

Reverse depends: dvir, forrel, ibdsim2, paramlink2, pedbuildr, pedFamilias, pedprobr, pedsuite, ribd, segregatr, verbalisr
Reverse imports: forensicolors, forensIT, KinMixLite, KLINK, mispitools, numberofalleles, relMix, simDNAmixtures

Linking:

Please use the canonical form https://CRAN.R-project.org/package=pedtools to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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