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Recursive algorithms for computing various relatedness coefficients, including pairwise kinship, kappa and identity coefficients. Both autosomal and X-linked coefficients are computed. Founders are allowed to be inbred, which enables construction of any given kappa coefficients, as described in Vigeland (2020) <doi:10.1007/s00285-020-01505-x>. In addition to the standard coefficients, 'ribd' also computes a range of lesser-known coefficients, including generalised kinship coefficients, multi-person coefficients and two-locus coefficients (Vigeland, 2023, <doi:10.1093/g3journal/jkac326>). Many features of 'ribd' are available through the online app 'QuickPed' at <https://magnusdv.shinyapps.io/quickped>; see Vigeland (2022) <doi:10.1186/s12859-022-04759-y>.
Version: | 1.7.0 |
Depends: | pedtools (≥ 2.2.0), R (≥ 4.1.0) |
Imports: | glue, kinship2, slam |
Suggests: | ggplot2, ggrepel, plotly, spelling, testthat |
Published: | 2024-03-26 |
DOI: | 10.32614/CRAN.package.ribd |
Author: | Magnus Dehli Vigeland
|
Maintainer: | Magnus Dehli Vigeland <m.d.vigeland at medisin.uio.no> |
License: | GPL-3 |
URL: | https://github.com/magnusdv/ribd, https://magnusdv.github.io/pedsuite/ |
NeedsCompilation: | no |
Language: | en-GB |
Citation: | ribd citation info |
Materials: | README NEWS |
CRAN checks: | ribd results |
Reference manual: | ribd.pdf |
Package source: | ribd_1.7.0.tar.gz |
Windows binaries: | r-devel: ribd_1.7.0.zip, r-release: ribd_1.7.0.zip, r-oldrel: ribd_1.7.0.zip |
macOS binaries: | r-release (arm64): ribd_1.7.0.tgz, r-oldrel (arm64): ribd_1.7.0.tgz, r-release (x86_64): ribd_1.7.0.tgz, r-oldrel (x86_64): ribd_1.7.0.tgz |
Old sources: | ribd archive |
Reverse depends: | pedsuite |
Reverse imports: | dvir, forrel, ibdsim2, KinMixLite, numberofalleles, pedbuildr, verbalisr |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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