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An implementation of the full-likelihood Bayes factor (FLB) for evaluating segregation evidence in clinical medical genetics. The method was introduced by Thompson et al. (2003) <doi:10.1086/378100>. This implementation supports custom penetrance values and liability classes, and allows visualisations and robustness analysis as presented in Ratajska et al. (2023) <doi:10.1002/mgg3.2107>. See also the online app 'shinyseg', <https://chrcarrizosa.shinyapps.io/shinyseg>, which offers interactive segregation analysis with many additional features (Carrizosa et al. (2024) <doi:10.1093/bioinformatics/btae201>).
Version: | 0.4.0 |
Depends: | pedtools (≥ 2.2.0), R (≥ 4.1.0) |
Imports: | pedprobr |
Suggests: | testthat |
Published: | 2024-06-28 |
DOI: | 10.32614/CRAN.package.segregatr |
Author: | Magnus Dehli Vigeland
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Maintainer: | Magnus Dehli Vigeland <m.d.vigeland at medisin.uio.no> |
BugReports: | https://github.com/magnusdv/segregatr/issues |
License: | GPL-3 |
URL: | https://github.com/magnusdv/segregatr |
NeedsCompilation: | no |
Language: | en-GB |
Citation: | segregatr citation info |
Materials: | README NEWS |
CRAN checks: | segregatr results |
Reference manual: | segregatr.pdf |
Package source: | segregatr_0.4.0.tar.gz |
Windows binaries: | r-devel: segregatr_0.4.0.zip, r-release: segregatr_0.4.0.zip, r-oldrel: segregatr_0.4.0.zip |
macOS binaries: | r-release (arm64): segregatr_0.4.0.tgz, r-oldrel (arm64): segregatr_0.4.0.tgz, r-release (x86_64): segregatr_0.4.0.tgz, r-oldrel (x86_64): segregatr_0.4.0.tgz |
Old sources: | segregatr archive |
Reverse imports: | pedsuite |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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