CRAN Package Check Results for Maintainer ‘Kevin R. Coombes <krc at silicovore.com>’

Last updated on 2024-05-02 11:52:06 CEST.

Package	NOTE	OK
BimodalIndex		12
ClassComparison		13
ClassDiscovery	1	12
CloneSeeker		12
CrossValidate		13
GenAlgo	2	11
integIRTy		12
Mercator	1	12
Modeler		13
NameNeedle		12
NewmanOmics	1	12
oompaBase		12
oompaData		13
PCDimension		13
plasma	1	12
Polychrome		12
PreProcess		12
RCytoGPS		12
SIBERG	1	11
SillyPutty		13
TailRank		13
Thresher	1	12
Umpire		12
WayFindR		13

Package BimodalIndex

Current CRAN status: OK: 12

Package ClassComparison

Current CRAN status: OK: 13

Additional issues

M1mac

Package ClassDiscovery

Current CRAN status: NOTE: 1, OK: 12

Version: 3.4.0
Check: Rd files
Result: NOTE checkRd: (-1) cd01-0-distanceMatrix.Rd:37-39: Lost braces in \itemize; meant \describe ? checkRd: (-1) cd01-0-distanceMatrix.Rd:40-43: Lost braces in \itemize; meant \describe ? checkRd: (-1) cd01-0-distanceMatrix.Rd:44-46: Lost braces in \itemize; meant \describe ? checkRd: (-1) cd01-0-distanceMatrix.Rd:47-48: Lost braces in \itemize; meant \describe ? checkRd: (-1) cd01-0-distanceMatrix.Rd:49-50: Lost braces in \itemize; meant \describe ? checkRd: (-1) cd01-0-distanceMatrix.Rd:51-52: Lost braces in \itemize; meant \describe ? checkRd: (-1) cd02-1-cluster3.Rd:25: Lost braces 25 | Kevin R. Coombes email{krc@silicovore.com} | ^ checkRd: (-1) cd03-0-ClusterTest-class.Rd:70: Lost braces 70 | Kevin R. Coombes email{krc@silicovore.com} | ^ Flavor: r-release-linux-x86_64

Package CloneSeeker

Current CRAN status: OK: 12

Package CrossValidate

Current CRAN status: OK: 13

Package GenAlgo

Current CRAN status: NOTE: 2, OK: 11

Version: 2.2.0
Check: data for non-ASCII characters
Result: NOTE Note: found 17 marked UTF-8 strings Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Package integIRTy

Current CRAN status: OK: 12

Package Mercator

Current CRAN status: NOTE: 1, OK: 12

Version: 1.1.2
Check: Rd files
Result: NOTE checkRd: (-1) Mercator-class.Rd:91-92: Lost braces 91 | \item{barplot{height, main = '', sub = NULL, border = NA, space = | ^ checkRd: (-1) Mercator-class.Rd:109-112: Lost braces 109 | \item{hist:}{\code{signature(object = "Mercator")}}{ | ^ checkRd: (-1) Mercator-class.Rd:113-116: Lost braces 113 | \item{summary:}{\code{signature(object = "Mercator")}}{ | ^ checkRd: (-1) Mercator-class.Rd:117-119: Lost braces 117 | \item{dim:}{\code{signature(object = "Mercator")}}{ | ^ checkRd: (-1) Mercator-class.Rd:120-122: Lost braces 120 | \item{[:}{\code{signature(object = "Mercator")}}{ | ^ checkRd: (-1) threshLGF.Rd:21: Lost braces; missing escapes or markup? 21 | \item{object}{An object of class {BinaryMatrix} | ^ Flavor: r-release-linux-x86_64

Package Modeler

Current CRAN status: OK: 13

Package NameNeedle

Current CRAN status: OK: 12

Package NewmanOmics

Current CRAN status: NOTE: 1, OK: 12

Version: 1.0.10
Check: Rd files
Result: NOTE checkRd: (-1) 03-MixOf3Beta-class.Rd:35: Lost braces; missing escapes or markup? 35 | parameters \code{L} and {M} (in that order).} | ^ Flavor: r-release-linux-x86_64

Package oompaBase

Current CRAN status: OK: 12

Package oompaData

Current CRAN status: OK: 13

Package PCDimension

Current CRAN status: OK: 13

Package plasma

Current CRAN status: NOTE: 1, OK: 12

Version: 1.0.0
Check: Rd files
Result: NOTE checkRd: (-1) 01-TCGA-ESCA-data.Rd:47: Lost braces in \enumerate; meant \describe ? checkRd: (-1) 01-TCGA-ESCA-data.Rd:48: Lost braces in \enumerate; meant \describe ? checkRd: (-1) 01-TCGA-ESCA-data.Rd:49-51: Lost braces in \enumerate; meant \describe ? checkRd: (-1) 01-TCGA-ESCA-data.Rd:52-55: Lost braces in \enumerate; meant \describe ? checkRd: (-1) 01-TCGA-ESCA-data.Rd:56-58: Lost braces in \enumerate; meant \describe ? checkRd: (-1) 01-TCGA-ESCA-data.Rd:59-62: Lost braces in \enumerate; meant \describe ? checkRd: (-1) 01-TCGA-ESCA-data.Rd:63-64: Lost braces in \enumerate; meant \describe ? checkRd: (-1) 02-fitCoxModel.Rd:87: Lost braces; missing escapes or markup? 87 | returns the value on which it was invoked. The {summary} method | ^ Flavor: r-release-linux-x86_64

Package Polychrome

Current CRAN status: OK: 12

Package PreProcess

Current CRAN status: OK: 12

Package RCytoGPS

Current CRAN status: OK: 12

Package SIBERG

Current CRAN status: NOTE: 1, OK: 11

Version: 2.0.3
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘edgeR’ Flavor: r-oldrel-macos-x86_64

Version: 2.0.3
Check: re-building of vignette outputs
Result: NOTE Note: skipping ‘SIBER.Rnw’ due to unavailable dependencies: 'edgeR' Flavor: r-oldrel-macos-x86_64

Package SillyPutty

Current CRAN status: OK: 13

Package TailRank

Current CRAN status: OK: 13

Package Thresher

Current CRAN status: NOTE: 1, OK: 12

Version: 1.1.3
Check: Rd files
Result: NOTE checkRd: (-1) 01-dataObjects.Rd:18-19: Lost braces 18 | \item \code{sigma}{: A list of length five; each entry is a covariance matrix | ^ checkRd: (-1) 01-dataObjects.Rd:20-23: Lost braces 20 | \item \code{savedSims}{: A list of length five; each entry is a | ^ checkRd: (-1) 01-dataObjects.Rd:24-26: Lost braces 24 | \item \code{savedReap}{: A list of length five; each entry is a | ^ Flavor: r-release-linux-x86_64

Package Umpire

Current CRAN status: OK: 12

Package WayFindR

Current CRAN status: OK: 13