CRAN Package Check Results for Maintainer ‘Kevin R. Coombes <krc at silicovore.com>’

Last updated on 2026-01-20 23:50:43 CET.

Package	NOTE	OK
BimodalIndex		13
ClassComparison		13
ClassDiscovery		13
CloneSeeker	3	10
CrossValidate		13
GenAlgo		13
integIRTy		13
Mercator		13
Modeler		13
NameNeedle		13
NewmanOmics		13
oompaBase		13
oompaData		13
PCDimension		13
plasma		13
Polychrome		13
PreProcess		13
RCytoGPS	3	10
RPointCloud		13
SIBERG		13
SillyPutty		13
SVAlignR		13
TailRank		13
Thresher		13
Umpire		13
WayFindR		13

Package BimodalIndex

Current CRAN status: OK: 13

Package ClassComparison

Current CRAN status: OK: 13

Package ClassDiscovery

Current CRAN status: OK: 13

Package CloneSeeker

Current CRAN status: NOTE: 3, OK: 10

Version: 1.0.13
Check: tests
Result: NOTE Running ‘test01-Simplex.R’ [2s/3s] Comparing ‘test01-Simplex.Rout’ to ‘test01-Simplex.Rout.save’ ... OK Running ‘test02-WV.R’ [3s/3s] Comparing ‘test02-WV.Rout’ to ‘test02-WV.Rout.save’ ... OK Running ‘test03-simulate.R’ [35s/50s] Comparing ‘test03-simulate.Rout’ to ‘test03-simulate.Rout.save’ ...69c69 < NAs :428 --- > NA's :428 71c71 < Mode NAs --- > Mode NA's 127c127 < NAs :282 --- > NA's :282 129c129 < Mode NAs --- > Mode NA's 151c151 < NAs :340 --- > NA's :340 230c230 < NAs :1e+06 --- > NA's :1e+06 Running ‘test04-algorithm.R’ [94s/123s] Comparing ‘test04-algorithm.Rout’ to ‘test04-algorithm.Rout.save’ ...181c181 < Mode NAs --- > Mode NA's Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0.13
Check: tests
Result: NOTE Running ‘test01-Simplex.R’ [2s/2s] Comparing ‘test01-Simplex.Rout’ to ‘test01-Simplex.Rout.save’ ... OK Running ‘test02-WV.R’ [2s/2s] Comparing ‘test02-WV.Rout’ to ‘test02-WV.Rout.save’ ... OK Running ‘test03-simulate.R’ [21s/25s] Comparing ‘test03-simulate.Rout’ to ‘test03-simulate.Rout.save’ ...69c69 < NAs :428 --- > NA's :428 71c71 < Mode NAs --- > Mode NA's 127c127 < NAs :282 --- > NA's :282 129c129 < Mode NAs --- > Mode NA's 151c151 < NAs :340 --- > NA's :340 230c230 < NAs :1e+06 --- > NA's :1e+06 Running ‘test04-algorithm.R’ [55s/65s] Comparing ‘test04-algorithm.Rout’ to ‘test04-algorithm.Rout.save’ ...181c181 < Mode NAs --- > Mode NA's Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.13
Check: tests
Result: NOTE Running ‘test01-Simplex.R’ [4s/12s] Comparing ‘test01-Simplex.Rout’ to ‘test01-Simplex.Rout.save’ ... OK Running ‘test02-WV.R’ [4s/11s] Comparing ‘test02-WV.Rout’ to ‘test02-WV.Rout.save’ ... OK Running ‘test03-simulate.R’ [61s/225s] Comparing ‘test03-simulate.Rout’ to ‘test03-simulate.Rout.save’ ...69c69 < NAs :428 --- > NA's :428 71c71 < Mode NAs --- > Mode NA's 127c127 < NAs :282 --- > NA's :282 129c129 < Mode NAs --- > Mode NA's 151c151 < NAs :340 --- > NA's :340 230c230 < NAs :1e+06 --- > NA's :1e+06 Running ‘test04-algorithm.R’ [164s/512s] Comparing ‘test04-algorithm.Rout’ to ‘test04-algorithm.Rout.save’ ...181c181 < Mode NAs --- > Mode NA's Flavor: r-devel-linux-x86_64-fedora-gcc

Package CrossValidate

Current CRAN status: OK: 13

Package GenAlgo

Current CRAN status: OK: 13

Package integIRTy

Current CRAN status: OK: 13

Package Mercator

Current CRAN status: OK: 13

Package Modeler

Current CRAN status: OK: 13

Package NameNeedle

Current CRAN status: OK: 13

Package NewmanOmics

Current CRAN status: OK: 13

Package oompaBase

Current CRAN status: OK: 13

Package oompaData

Current CRAN status: OK: 13

Package PCDimension

Current CRAN status: OK: 13

Package plasma

Current CRAN status: OK: 13

Package Polychrome

Current CRAN status: OK: 13

Package PreProcess

Current CRAN status: OK: 13

Package RCytoGPS

Current CRAN status: NOTE: 3, OK: 10

Version: 1.2.9
Check: tests
Result: NOTE Running ‘test01-chrom.R’ [1s/1s] Comparing ‘test01-chrom.Rout’ to ‘test01-chrom.Rout.save’ ... OK Running ‘test02-gb.R’ [0s/1s] Comparing ‘test02-gb.Rout’ to ‘test02-gb.Rout.save’ ... OK Running ‘test03-objects.R’ [31s/42s] Comparing ‘test03-objects.Rout’ to ‘test03-objects.Rout.save’ ... OK Running ‘test100-read.R’ [1s/2s] Comparing ‘test100-read.Rout’ to ‘test100-read.Rout.save’ ... OK Running ‘test101-preclean.R’ [0s/0s] Comparing ‘test101-preclean.Rout’ to ‘test101-preclean.Rout.save’ ...22c22 < Mode FALSE TRUE NAs --- > Mode FALSE TRUE NA's 25c25 < Mode FALSE TRUE NAs --- > Mode FALSE TRUE NA's Running ‘testclip.R’ [1s/1s] Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.2.9
Check: tests
Result: NOTE Running ‘test01-chrom.R’ [0s/1s] Comparing ‘test01-chrom.Rout’ to ‘test01-chrom.Rout.save’ ... OK Running ‘test02-gb.R’ [0s/1s] Comparing ‘test02-gb.Rout’ to ‘test02-gb.Rout.save’ ... OK Running ‘test03-objects.R’ [19s/23s] Comparing ‘test03-objects.Rout’ to ‘test03-objects.Rout.save’ ... OK Running ‘test100-read.R’ [1s/1s] Comparing ‘test100-read.Rout’ to ‘test100-read.Rout.save’ ... OK Running ‘test101-preclean.R’ [0s/0s] Comparing ‘test101-preclean.Rout’ to ‘test101-preclean.Rout.save’ ...22c22 < Mode FALSE TRUE NAs --- > Mode FALSE TRUE NA's 25c25 < Mode FALSE TRUE NAs --- > Mode FALSE TRUE NA's Running ‘testclip.R’ [0s/1s] Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.2.9
Check: tests
Result: NOTE Running ‘test01-chrom.R’ Comparing ‘test01-chrom.Rout’ to ‘test01-chrom.Rout.save’ ... OK Running ‘test02-gb.R’ Comparing ‘test02-gb.Rout’ to ‘test02-gb.Rout.save’ ... OK Running ‘test03-objects.R’ [49s/173s] Comparing ‘test03-objects.Rout’ to ‘test03-objects.Rout.save’ ... OK Running ‘test100-read.R’ Comparing ‘test100-read.Rout’ to ‘test100-read.Rout.save’ ... OK Running ‘test101-preclean.R’ Comparing ‘test101-preclean.Rout’ to ‘test101-preclean.Rout.save’ ...22c22 < Mode FALSE TRUE NAs --- > Mode FALSE TRUE NA's 25c25 < Mode FALSE TRUE NAs --- > Mode FALSE TRUE NA's Running ‘testclip.R’ Flavor: r-devel-linux-x86_64-fedora-gcc

Package RPointCloud

Current CRAN status: OK: 13

Package SIBERG

Current CRAN status: OK: 13

Package SillyPutty

Current CRAN status: OK: 13

Package SVAlignR

Current CRAN status: OK: 13

Package TailRank

Current CRAN status: OK: 13

Package Thresher

Current CRAN status: OK: 13

Package Umpire

Current CRAN status: OK: 13

Package WayFindR

Current CRAN status: OK: 13