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phylobase: Base Package for Phylogenetic Structures and Comparative Data

Provides a base S4 class for comparative methods, incorporating one or more trees and trait data.

Version: 0.8.12
Imports: ade4, ape (≥ 3.0), Rcpp (≥ 0.11.0), rncl (≥ 0.6.0), grid, methods, stats, RNeXML
LinkingTo: Rcpp
Suggests: MASS, testthat (≥ 0.8.1), knitr, rmarkdown
Published: 2024-01-30
DOI: 10.32614/CRAN.package.phylobase
Author: R Hackathon et al. (alphabetically: Ben Bolker, Marguerite Butler, Peter Cowan, Damien de Vienne, Dirk Eddelbuettel, Mark Holder, Thibaut Jombart, Steve Kembel, Francois Michonneau, David Orme, Brian O'Meara, Emmanuel Paradis, Jim Regetz, Derrick Zwickl)
Maintainer: Francois Michonneau <francois.michonneau at gmail.com>
BugReports: https://github.com/fmichonneau/phylobase/issues
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
URL: https://github.com/fmichonneau/phylobase
NeedsCompilation: yes
Materials: README NEWS
In views: Phylogenetics
CRAN checks: phylobase results

Documentation:

Reference manual: phylobase.pdf
Vignettes: The phylo4 classes and methods

Downloads:

Package source: phylobase_0.8.12.tar.gz
Windows binaries: r-devel: phylobase_0.8.12.zip, r-release: phylobase_0.8.12.zip, r-oldrel: phylobase_0.8.12.zip
macOS binaries: r-release (arm64): phylobase_0.8.12.tgz, r-oldrel (arm64): phylobase_0.8.12.tgz, r-release (x86_64): phylobase_0.8.12.tgz, r-oldrel (x86_64): phylobase_0.8.12.tgz
Old sources: phylobase archive

Reverse dependencies:

Reverse imports: adephylo, adiv, clusterExperiment, DAISIEprep, ddtlcm, nodeSub, PCPS, phyext2, phylocanvas, phylosem, phylosignal, phyloTop, SigTree
Reverse suggests: ecostats, phyloraster, RAINBOWR, rotl

Linking:

Please use the canonical form https://CRAN.R-project.org/package=phylobase to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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