The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.

RAINBOWR: Genome-Wide Association Study with SNP-Set Methods

By using 'RAINBOWR' (Reliable Association INference By Optimizing Weights with R), users can test multiple SNPs (Single Nucleotide Polymorphisms) simultaneously by kernel-based (SNP-set) methods. This package can also be applied to haplotype-based GWAS (Genome-Wide Association Study). Users can test not only additive effects but also dominance and epistatic effects. In detail, please check our paper on PLOS Computational Biology: Kosuke Hamazaki and Hiroyoshi Iwata (2020) <doi:10.1371/journal.pcbi.1007663>.

Version: 0.1.35
Depends: R (≥ 3.5.0)
Imports: Rcpp, Matrix, cluster, MASS, pbmcapply, optimx, methods, ape, stringr, pegas, rrBLUP, expm, here, htmlwidgets, Rfast, gaston, MM4LMM, R.utils
LinkingTo: Rcpp, RcppEigen
Suggests: knitr, rmarkdown, plotly, haplotypes, adegenet, ggplot2, ggtree, scatterpie, phylobase, furrr, future, progressr, foreach, doParallel, data.table
Published: 2024-03-03
DOI: 10.32614/CRAN.package.RAINBOWR
Author: Kosuke Hamazaki [aut, cre], Hiroyoshi Iwata [aut, ctb]
Maintainer: Kosuke Hamazaki <hamazaki at ut-biomet.org>
License: MIT + file LICENSE
NeedsCompilation: yes
Citation: RAINBOWR citation info
Materials: README NEWS
CRAN checks: RAINBOWR results

Documentation:

Reference manual: RAINBOWR.pdf
Vignettes: RAINBOWR

Downloads:

Package source: RAINBOWR_0.1.35.tar.gz
Windows binaries: r-devel: RAINBOWR_0.1.35.zip, r-release: RAINBOWR_0.1.35.zip, r-oldrel: RAINBOWR_0.1.35.zip
macOS binaries: r-release (arm64): RAINBOWR_0.1.35.tgz, r-oldrel (arm64): RAINBOWR_0.1.35.tgz, r-release (x86_64): RAINBOWR_0.1.35.tgz, r-oldrel (x86_64): RAINBOWR_0.1.35.tgz
Old sources: RAINBOWR archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=RAINBOWR to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.