RAINBOWR: Genome-Wide Association Study with SNP-Set Methods

By using 'RAINBOWR' (Reliable Association INference By Optimizing Weights with R), users can test multiple SNPs (Single Nucleotide Polymorphisms) simultaneously by kernel-based (SNP-set) methods. This package can also be applied to haplotype-based GWAS (Genome-Wide Association Study). Users can test not only additive effects but also dominance and epistatic effects. In detail, please check our paper on PLOS Computational Biology: Kosuke Hamazaki and Hiroyoshi Iwata (2020) <doi:10.1371/journal.pcbi.1007663>.

Version:	0.1.35
Depends:	R (≥ 3.5.0)
Imports:	Rcpp, Matrix, cluster, MASS, pbmcapply, optimx, methods, ape, stringr, pegas, rrBLUP, expm, here, htmlwidgets, Rfast, gaston, MM4LMM, R.utils
LinkingTo:	Rcpp, RcppEigen
Suggests:	knitr, rmarkdown, plotly, haplotypes, adegenet, ggplot2, ggtree, scatterpie, phylobase, furrr, future, progressr, foreach, doParallel, data.table
Published:	2024-03-03
DOI:	10.32614/CRAN.package.RAINBOWR
Author:	Kosuke Hamazaki [aut, cre], Hiroyoshi Iwata [aut, ctb]
Maintainer:	Kosuke Hamazaki <hamazaki at ut-biomet.org>
License:	MIT + file LICENSE
NeedsCompilation:	yes
Citation:	RAINBOWR citation info
Materials:	README NEWS
CRAN checks:	RAINBOWR results

Documentation:

Reference manual:	RAINBOWR.pdf
Vignettes:	RAINBOWR

Downloads:

Package source:	RAINBOWR_0.1.35.tar.gz
Windows binaries:	r-devel: RAINBOWR_0.1.35.zip, r-release: RAINBOWR_0.1.35.zip, r-oldrel: RAINBOWR_0.1.35.zip
macOS binaries:	r-release (arm64): RAINBOWR_0.1.35.tgz, r-oldrel (arm64): RAINBOWR_0.1.35.tgz, r-release (x86_64): RAINBOWR_0.1.35.tgz, r-oldrel (x86_64): RAINBOWR_0.1.35.tgz
Old sources:	RAINBOWR archive

Linking:

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