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RNeXML: Semantically Rich I/O for the 'NeXML' Format

Provides access to phyloinformatic data in 'NeXML' format. The package should add new functionality to R such as the possibility to manipulate 'NeXML' objects in more various and refined way and compatibility with 'ape' objects.

Version: 2.4.11
Depends: R (≥ 3.0.0), ape (≥ 3.1), methods (≥ 3.0.0)
Imports: XML (≥ 3.95), plyr (≥ 1.8), reshape2 (≥ 1.2.2), httr (≥ 0.3), uuid (≥ 0.1-1), dplyr (≥ 0.7.0), tidyr (≥ 0.3.1), stringr (≥ 1.0), stringi, xml2, rlang
Suggests: spelling, rdflib, geiger (≥ 2.0), phytools (≥ 0.3.93), knitr (≥ 1.5), rfigshare (≥ 0.3.0), knitcitations (≥ 1.0.1), testthat (≥ 0.10.0), rmarkdown (≥ 0.3.3), xslt, covr, taxalight, progress
Published: 2023-02-01
DOI: 10.32614/CRAN.package.RNeXML
Author: Carl Boettiger ORCID iD [cre, aut], Scott Chamberlain ORCID iD [aut], Hilmar Lapp ORCID iD [aut], Kseniia Shumelchyk [aut], Rutger Vos ORCID iD [aut]
Maintainer: Carl Boettiger <cboettig at gmail.com>
BugReports: https://github.com/ropensci/RNeXML/issues
License: BSD_3_clause + file LICENSE
URL: https://docs.ropensci.org/RNeXML/, https://github.com/ropensci/RNeXML
NeedsCompilation: no
Language: en-US
Citation: RNeXML citation info
Materials: README NEWS
In views: Phylogenetics
CRAN checks: RNeXML results

Documentation:

Reference manual: RNeXML.pdf
Vignettes: The nexml S4 Object
A Brief Introduction to RNeXMLL
Handling Metadata in RNeXML
Extending NeXML to simmap
SPARQL with RNeXML

Downloads:

Package source: RNeXML_2.4.11.tar.gz
Windows binaries: r-devel: RNeXML_2.4.11.zip, r-release: RNeXML_2.4.11.zip, r-oldrel: RNeXML_2.4.11.zip
macOS binaries: r-release (arm64): RNeXML_2.4.11.tgz, r-oldrel (arm64): RNeXML_2.4.11.tgz, r-release (x86_64): RNeXML_2.4.11.tgz, r-oldrel (x86_64): RNeXML_2.4.11.tgz
Old sources: RNeXML archive

Reverse dependencies:

Reverse imports: phylobase
Reverse suggests: rotl

Linking:

Please use the canonical form https://CRAN.R-project.org/package=RNeXML to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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