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A collection of data structures and methods for handling volumetric brain imaging data, with a focus on functional magnetic resonance imaging (fMRI). Provides efficient representations for three-dimensional and four-dimensional neuroimaging data through sparse and dense array implementations, memory-mapped file access for large datasets, and spatial transformation capabilities. Implements methods for image resampling, spatial filtering, region of interest analysis, and connected component labeling. General introduction to fMRI analysis can be found in Poldrack et al. (2024, "Handbook of functional MRI data analysis", <ISBN:9781108795760>).
| Version: | 0.8.1 |
| Depends: | R (≥ 4.3.0), Matrix |
| Imports: | purrr, assertthat, mmap, Rcpp, RcppParallel, RNifti, dbscan, stringr, methods, colorplane, bigstatsr, RNiftyReg, future.apply, deflist, crayon, ggplot2, magrittr |
| LinkingTo: | Rcpp, RcppArmadillo, RcppParallel |
| Suggests: | testthat, covr, knitr, roxygen2, rmarkdown, Gmedian, R.utils, spelling |
| Published: | 2025-04-10 |
| DOI: | 10.32614/CRAN.package.neuroim2 |
| Author: | Bradley R Buchsbaum [aut, cre, cph] |
| Maintainer: | Bradley R Buchsbaum <brad.buchsbaum at gmail.com> |
| BugReports: | https://github.com/bbuchsbaum/neuroim2/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/bbuchsbaum/neuroim2, https://bbuchsbaum.github.io/neuroim2/ |
| NeedsCompilation: | yes |
| Language: | en-US |
| Materials: | NEWS |
| CRAN checks: | neuroim2 results |
| Reference manual: | neuroim2.pdf |
| Vignettes: |
Working with Image Volumes (source, R code) Four dimensional neuroimaging data (source, R code) Pipelines (source, R code) Regions of Interest (source, R code) |
| Package source: | neuroim2_0.8.1.tar.gz |
| Windows binaries: | r-devel: not available, r-release: neuroim2_0.8.1.zip, r-oldrel: not available |
| macOS binaries: | r-devel (arm64): neuroim2_0.8.1.tgz, r-release (arm64): neuroim2_0.8.1.tgz, r-oldrel (arm64): neuroim2_0.8.1.tgz, r-devel (x86_64): neuroim2_0.8.1.tgz, r-release (x86_64): neuroim2_0.8.1.tgz, r-oldrel (x86_64): neuroim2_0.8.1.tgz |
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These binaries (installable software) and packages are in development.
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