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A fast reimplementation of several density-based algorithms of the DBSCAN family. Includes the clustering algorithms DBSCAN (density-based spatial clustering of applications with noise) and HDBSCAN (hierarchical DBSCAN), the ordering algorithm OPTICS (ordering points to identify the clustering structure), shared nearest neighbor clustering, and the outlier detection algorithms LOF (local outlier factor) and GLOSH (global-local outlier score from hierarchies). The implementations use the kd-tree data structure (from library ANN) for faster k-nearest neighbor search. An R interface to fast kNN and fixed-radius NN search is also provided. Hahsler, Piekenbrock and Doran (2019) <doi:10.18637/jss.v091.i01>.
Version: | 1.2-0 |
Depends: | R (≥ 3.2.0) |
Imports: | Rcpp (≥ 1.0.0), graphics, stats, generics |
LinkingTo: | Rcpp |
Suggests: | fpc, microbenchmark, testthat (≥ 3.0.0), dendextend, igraph, knitr, rmarkdown, tibble, rlang |
Published: | 2024-06-28 |
DOI: | 10.32614/CRAN.package.dbscan |
Author: | Michael Hahsler [aut, cre, cph], Matthew Piekenbrock [aut, cph], Sunil Arya [ctb, cph], David Mount [ctb, cph] |
Maintainer: | Michael Hahsler <mhahsler at lyle.smu.edu> |
BugReports: | https://github.com/mhahsler/dbscan/issues |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
Copyright: | ANN library is copyright by University of Maryland, Sunil Arya and David Mount. All other code is copyright by Michael Hahsler and Matthew Piekenbrock. |
URL: | https://github.com/mhahsler/dbscan |
NeedsCompilation: | yes |
Citation: | dbscan citation info |
Materials: | README NEWS |
In views: | Cluster |
CRAN checks: | dbscan results |
Reference manual: | dbscan.pdf |
Vignettes: |
Hierarchical DBSCAN (HDBSCAN) with the dbscan package Fast Density-based Clustering (DBSCAN and OPTICS) |
Package source: | dbscan_1.2-0.tar.gz |
Windows binaries: | r-devel: dbscan_1.2-0.zip, r-release: dbscan_1.2-0.zip, r-oldrel: dbscan_1.2-0.zip |
macOS binaries: | r-release (arm64): dbscan_1.2-0.tgz, r-oldrel (arm64): dbscan_1.2-0.tgz, r-release (x86_64): dbscan_1.2-0.tgz, r-oldrel (x86_64): dbscan_1.2-0.tgz |
Old sources: | dbscan archive |
Reverse imports: | AFM, AnimalSequences, Banksy, bioregion, celda, CiteFuse, CLONETv2, CluMSID, cordillera, CPC, crosshap, daltoolbox, DDoutlier, decontX, dobin, dPCP, eventstream, evprof, fdacluster, FORTLS, funtimes, FuzzyDBScan, geva, immunaut, karyotapR, LOMAR, maotai, mariner, metaCluster, miRSM, NanoMethViz, oclust, openSkies, optimalFlow, ParBayesianOptimization, PIUMA, POMA, preciseTAD, rMultiNet, smotefamily, snap, SPIAT, squat, ssMRCD, stream, SuperCell, synr, tidySEM, weird |
Reverse suggests: | ClustAssess, diceR, doc2vec, EHRtemporalVariability, FCPS, ksharp, MapperAlgo, metasnf, mlr3cluster, opticskxi, OTclust, pagoda2, parameters, performance, seriation, sfdep, sfnetworks, sharp, shipunov, simplifyEnrichment, smartid, spdep |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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