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Easy-to-use, efficient, flexible and scalable statistical tools. Package bigstatsr provides and uses Filebacked Big Matrices via memory-mapping. It provides for instance matrix operations, Principal Component Analysis, sparse linear supervised models, utility functions and more <doi:10.1093/bioinformatics/bty185>.
| Version: | 1.6.1 |
| Depends: | R (≥ 3.4) |
| Imports: | bigassertr (≥ 0.1.1), bigparallelr (≥ 0.2.3), cowplot, foreach, ggplot2 (≥ 3.0), graphics, methods, ps (≥ 1.4), Rcpp, rmio (≥ 0.4), RSpectra, stats, tibble, utils |
| LinkingTo: | Rcpp, RcppArmadillo, rmio |
| Suggests: | bigmemory (≥ 4.5.33), bigreadr (≥ 0.2), covr, data.table, dplyr, glmnet, hexbin, memuse, ModelMetrics, plotly, ppcor, RhpcBLASctl, spelling (≥ 1.2), testthat |
| Published: | 2024-09-09 |
| DOI: | 10.32614/CRAN.package.bigstatsr |
| Author: | Florian Privé [aut, cre], Michael Blum [ths], Hugues Aschard [ths] |
| Maintainer: | Florian Privé <florian.prive.21 at gmail.com> |
| BugReports: | https://github.com/privefl/bigstatsr/issues |
| License: | GPL-3 |
| URL: | https://privefl.github.io/bigstatsr/ |
| NeedsCompilation: | yes |
| Language: | en-US |
| Citation: | bigstatsr citation info |
| Materials: | README NEWS |
| In views: | HighPerformanceComputing |
| CRAN checks: | bigstatsr results |
| Reference manual: | bigstatsr.pdf |
| Package source: | bigstatsr_1.6.1.tar.gz |
| Windows binaries: | r-devel: bigstatsr_1.6.1.zip, r-release: bigstatsr_1.6.1.zip, r-oldrel: bigstatsr_1.6.1.zip |
| macOS binaries: | r-release (arm64): bigstatsr_1.6.1.tgz, r-oldrel (arm64): bigstatsr_1.6.1.tgz, r-release (x86_64): bigstatsr_1.6.1.tgz, r-oldrel (x86_64): bigstatsr_1.6.1.tgz |
| Old sources: | bigstatsr archive |
| Reverse depends: | bigsnpr |
| Reverse imports: | ClustAll, Compositional, Directional, HDBRR, MAGAR, pchc, PRSPGx |
| Reverse linking to: | bigsnpr |
| Reverse suggests: | plmmr, uwot |
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