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Functions for phylogenetic analysis (Castiglione et al., 2018 <doi:10.1111/2041-210X.12954>). The functions perform the estimation of phenotypic evolutionary rates, identification of phenotypic evolutionary rate shifts, quantification of direction and size of evolutionary change in multivariate traits, the computation of ontogenetic shape vectors and test for morphological convergence.
| Version: | 2.8.1 |
| Depends: | R (≥ 3.6.0), emmeans (≥ 1.4.3) |
| Imports: | ape, phytools, stats4, foreach, doParallel, parallel |
| Suggests: | phangorn, rlist, scales, R.utils, cluster, RColorBrewer, nlme, car, smatr, picante, vegan, ddpcr, geomorph, rmarkdown, knitr, kableExtra, plotrix, pdftools, rgl, mvMORPH, ggplot2, qpdf, inflection, Rvcg, Morpho, evolqg, manipulate, markdown, Rphylopars, phylolm, webshot2, testthat (≥ 3.0.0) |
| Published: | 2024-08-22 |
| DOI: | 10.32614/CRAN.package.RRphylo |
| Author: | Pasquale Raia [aut], Silvia Castiglione [aut, cre], Carmela Serio [aut], Alessandro Mondanaro [aut], Marina Melchionna [aut], Mirko Di Febbraro [ctb], Antonio Profico [ctb], Francesco Carotenuto [ctb], Giorgia Girardi [aut] |
| Maintainer: | Silvia Castiglione <silvia.castiglione at unina.it> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| Citation: | RRphylo citation info |
| Materials: | README NEWS |
| In views: | Paleontology |
| CRAN checks: | RRphylo results |
| Reference manual: | RRphylo.pdf |
| Vignettes: |
Plotting-tools (source) RRphylo (source) Tree-Manipulation (source) overfitRR (source) search.conv (source) search.shift (source) search.trend (source) swapONE (source) |
| Package source: | RRphylo_2.8.1.tar.gz |
| Windows binaries: | r-devel: RRphylo_2.8.1.zip, r-release: RRphylo_2.8.1.zip, r-oldrel: RRphylo_2.8.1.zip |
| macOS binaries: | r-release (arm64): RRphylo_2.8.1.tgz, r-oldrel (arm64): RRphylo_2.8.1.tgz, r-release (x86_64): RRphylo_2.8.1.tgz, r-oldrel (x86_64): RRphylo_2.8.1.tgz |
| Old sources: | RRphylo archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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