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Provides functions for fitting phylogenetic linear models and phylogenetic generalized linear models. The computation uses an algorithm that is linear in the number of tips in the tree. The package also provides functions for simulating continuous or binary traits along the tree. Other tools include functions to test the adequacy of a population tree.
| Version: | 2.6.5 |
| Depends: | R (≥ 3.0), ape |
| Imports: | future.apply |
| Suggests: | testthat, nlme |
| Published: | 2024-09-30 |
| DOI: | 10.32614/CRAN.package.phylolm |
| Author: | Lam Si Tung Ho [aut, cre], Cecile Ane [aut], Robert Lachlan [ctb], Kelsey Tarpinian [ctb], Rachel Feldman [ctb], Qing Yu [ctb], Wouter van der Bijl [ctb], Joan Maspons [ctb], Rutger Vos [ctb], Paul Bastide [ctb] |
| Maintainer: | Lam Si Tung Ho <lamho86 at gmail.com> |
| BugReports: | https://github.com/lamho86/phylolm/issues |
| License: | GPL-2 | GPL-3 | file LICENSE [expanded from: GPL (≥ 2) | file LICENSE] |
| URL: | https://github.com/lamho86/phylolm |
| NeedsCompilation: | yes |
| Citation: | phylolm citation info |
| Materials: | README |
| In views: | Phylogenetics |
| CRAN checks: | phylolm results |
| Reference manual: | phylolm.pdf |
| Package source: | phylolm_2.6.5.tar.gz |
| Windows binaries: | r-devel: phylolm_2.6.5.zip, r-release: phylolm_2.6.5.zip, r-oldrel: phylolm_2.6.5.zip |
| macOS binaries: | r-release (arm64): phylolm_2.6.5.tgz, r-oldrel (arm64): phylolm_2.6.5.tgz, r-release (x86_64): phylolm_2.6.5.tgz, r-oldrel (x86_64): phylolm_2.6.5.tgz |
| Old sources: | phylolm archive |
| Reverse depends: | phylolm.hp, sensiPhy |
| Reverse imports: | cauphy, compcodeR, dispRity, OUwie, phylopath, POMS, ratematrix, Rphylopars, rr2 |
| Reverse suggests: | DHARMa, fuzzySim, insight, marginaleffects, phylosem, phyr, RRphylo |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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