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Tools for performing phylogenetic comparative methods for datasets with with multiple observations per species (intraspecific variation or measurement error) and/or missing data (Goolsby et al. 2017). Performs ancestral state reconstruction and missing data imputation on the estimated evolutionary model, which can be specified as Brownian Motion, Ornstein-Uhlenbeck, Early-Burst, Pagel's lambda, kappa, or delta, or a star phylogeny.
| Version: | 0.3.10 |
| Depends: | ape |
| Imports: | Rcpp, doBy, phylolm, phytools, Matrix, MASS, numDeriv |
| LinkingTo: | Rcpp, RcppArmadillo |
| Published: | 2024-01-18 |
| DOI: | 10.32614/CRAN.package.Rphylopars |
| Author: | Eric W. Goolsby [aut, cre], Jorn Bruggeman [aut], Cecile Ane [aut] |
| Maintainer: | Eric W. Goolsby <eric.goolsby.evolution at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/ericgoolsby/Rphylopars/wiki |
| NeedsCompilation: | yes |
| Materials: | README |
| In views: | MissingData, Phylogenetics |
| CRAN checks: | Rphylopars results |
| Reference manual: | Rphylopars.pdf |
| Package source: | Rphylopars_0.3.10.tar.gz |
| Windows binaries: | r-devel: Rphylopars_0.3.10.zip, r-release: Rphylopars_0.3.10.zip, r-oldrel: Rphylopars_0.3.10.zip |
| macOS binaries: | r-release (arm64): Rphylopars_0.3.10.tgz, r-oldrel (arm64): Rphylopars_0.3.10.tgz, r-release (x86_64): Rphylopars_0.3.10.tgz, r-oldrel (x86_64): Rphylopars_0.3.10.tgz |
| Old sources: | Rphylopars archive |
| Reverse suggests: | phylosem, RRphylo |
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