ddpcr: Analysis and Visualization of Droplet Digital PCR in R and on the Web
An interface to explore, analyze, and visualize droplet digital PCR (ddPCR) data in R. This is the first non-proprietary software for analyzing two-channel ddPCR data. An interactive tool was also created and is available online to facilitate this analysis for anyone who is not comfortable with using R.
| Version: | 1.15.2 |
| Depends: | R (≥ 3.1.0) |
| Imports: | DT (≥ 0.2), dplyr (≥ 0.5.0), ggplot2 (≥ 2.2.0), lazyeval (≥ 0.1.10), magrittr (≥ 1.5), mixtools (≥ 1.0.2), plyr (≥ 1.8.1), readr (≥ 0.1.0), shiny (≥ 0.11.0), shinydisconnect, shinyjs (≥ 0.4.0), tibble |
| Suggests: | ggExtra (≥ 0.3.0), graphics, grid (≥ 3.2.2), gridExtra (≥ 2.0.0), knitr (≥ 1.7), rmarkdown, stats, testthat (≥ 0.11.0), utils |
| Published: | 2023-08-20 |
| DOI: | 10.32614/CRAN.package.ddpcr |
| Author: | Dean Attali  [aut,
cre] |
| Maintainer: | Dean Attali <daattali at gmail.com> |
| BugReports: | https://github.com/daattali/ddpcr/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/daattali/ddpcr, https://daattali.com/shiny/ddpcr/ |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | ddpcr results |
Documentation:
| Reference manual: | ddpcr.pdf |
| Vignettes: |
Algorithms in ddpcr analysis Extending ddpcr by adding new plate types Package ddpcr Implementation technical details |
Downloads:
| Package source: | ddpcr_1.15.2.tar.gz |
| Windows binaries: | r-devel: ddpcr_1.15.2.zip, r-release: ddpcr_1.15.2.zip, r-oldrel: ddpcr_1.15.2.zip |
| macOS binaries: | r-release (arm64): ddpcr_1.15.2.tgz, r-oldrel (arm64): ddpcr_1.15.2.tgz, r-release (x86_64): ddpcr_1.15.2.tgz, r-oldrel (x86_64): ddpcr_1.15.2.tgz |
| Old sources: | ddpcr archive |
Reverse dependencies:
| Reverse imports: | CDatanet, EFAfactors |
| Reverse suggests: | RRphylo, vMF |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=ddpcr to link to this page.