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An interface to explore, analyze, and visualize droplet digital PCR (ddPCR) data in R. This is the first non-proprietary software for analyzing two-channel ddPCR data. An interactive tool was also created and is available online to facilitate this analysis for anyone who is not comfortable with using R.
Version: | 1.15.2 |
Depends: | R (≥ 3.1.0) |
Imports: | DT (≥ 0.2), dplyr (≥ 0.5.0), ggplot2 (≥ 2.2.0), lazyeval (≥ 0.1.10), magrittr (≥ 1.5), mixtools (≥ 1.0.2), plyr (≥ 1.8.1), readr (≥ 0.1.0), shiny (≥ 0.11.0), shinydisconnect, shinyjs (≥ 0.4.0), tibble |
Suggests: | ggExtra (≥ 0.3.0), graphics, grid (≥ 3.2.2), gridExtra (≥ 2.0.0), knitr (≥ 1.7), rmarkdown, stats, testthat (≥ 0.11.0), utils |
Published: | 2023-08-20 |
DOI: | 10.32614/CRAN.package.ddpcr |
Author: | Dean Attali |
Maintainer: | Dean Attali <daattali at gmail.com> |
BugReports: | https://github.com/daattali/ddpcr/issues |
License: | MIT + file LICENSE |
URL: | https://github.com/daattali/ddpcr, https://daattali.com/shiny/ddpcr/ |
NeedsCompilation: | no |
Materials: | README NEWS |
CRAN checks: | ddpcr results |
Reference manual: | ddpcr.pdf |
Vignettes: |
Algorithms in ddpcr analysis Extending ddpcr by adding new plate types Package ddpcr Implementation technical details |
Package source: | ddpcr_1.15.2.tar.gz |
Windows binaries: | r-devel: ddpcr_1.15.2.zip, r-release: ddpcr_1.15.2.zip, r-oldrel: ddpcr_1.15.2.zip |
macOS binaries: | r-release (arm64): ddpcr_1.15.2.tgz, r-oldrel (arm64): ddpcr_1.15.2.tgz, r-release (x86_64): ddpcr_1.15.2.tgz, r-oldrel (x86_64): ddpcr_1.15.2.tgz |
Old sources: | ddpcr archive |
Reverse imports: | CDatanet |
Reverse suggests: | RRphylo, vMF |
Please use the canonical form https://CRAN.R-project.org/package=ddpcr to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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