CRAN Package Check Results for Maintainer ‘John Muschelli <muschellij2 at gmail.com>’

Last updated on 2025-04-12 20:52:22 CEST.

Package	ERROR	NOTE	OK
brainR			14
cforward			14
cifti		7	7
diffr			14
freesurfer		4	10
fslr		4	10
gcite			14
gifti		7	7
glassdoor			14
kirby21.base			14
kirby21.fmri			14
kirby21.t1			14
leanpubr			14
matlabr			14
mscstts		4	10
neurobase	1	4	10
neurohcp			15
rscopus			15
stapler			15
stepcount			15
WhiteStripe		4	10

Package brainR

Current CRAN status: OK: 14

Package cforward

Current CRAN status: OK: 14

Package cifti

Current CRAN status: NOTE: 7, OK: 7

Version: 0.4.5
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package diffr

Current CRAN status: OK: 14

Package freesurfer

Current CRAN status: NOTE: 4, OK: 10

Version: 1.6.10
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: checkmnc-methods.Rd: checkimg fs_cmd.Rd: readnii readmgz.Rd: readnii readmnc.Rd: readnii Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Package fslr

Current CRAN status: NOTE: 4, OK: 10

Version: 2.25.3
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: check_file.Rd: checkimg fast.Rd: readnii flirt.Rd: readnii flirt_apply.Rd: readnii fnirt.Rd: readnii fnirt_with_affine.Rd: readnii fnirt_with_affine_apply.Rd: readnii fsl_anat.Rd: checkimg fsl_applywarp.Rd: readnii fsl_biascorrect.Rd: readnii fsl_cluster.Rd: readnii fsl_deface.Rd: readnii fsl_resample.Rd: readnii fslabs.Rd: readnii fslacos.Rd: readnii fsladd.Rd: readnii fslasin.Rd: readnii fslatan.Rd: readnii fslbet.Rd: readnii fslbin.Rd: readnii fslbinv.Rd: readnii fslchfiletype.Rd: readnii fslcmd.Rd: readnii fslcos.Rd: readnii fslcpgeom.Rd: readnii fsldilate.Rd: readnii fsldiv.Rd: readnii fsledge.Rd: readnii fslepi_reg.Rd: readnii fslerode.Rd: readnii fslexp.Rd: readnii fslfill.Rd: readnii fslfill2.Rd: readnii fslhd.Rd: checkimg fslindex.Rd: readnii fsllog.Rd: readnii fslmask.Rd: readnii fslmaths.Rd: readnii fslmerge.Rd: readnii fslmul.Rd: readnii fslnan.Rd: readnii fslnanm.Rd: readnii fslor.Rd: readnii fslorient.Rd: readnii fslrand.Rd: readnii fslrandn.Rd: readnii fslrange.Rd: checkimg fslrecip.Rd: readnii fslrem.Rd: readnii fslreorient2std.Rd: readnii fslrobustfov.Rd: readnii fslroi.Rd: readnii fslsin.Rd: readnii fslslicetimer.Rd: readnii fslsmooth.Rd: readnii fslsplit.Rd: readnii fslsqr.Rd: readnii fslsqrt.Rd: readnii fslstats.Rd: checkimg fslsub.Rd: readnii fslsub2.Rd: readnii fslswapdim.Rd: readnii fsltan.Rd: readnii fslthresh.Rd: readnii fslval.Rd: checkimg fslview.Rd: checkimg fslvol.Rd: voxdim fslxor.Rd: readnii getForms.Rd: checkimg mcflirt.Rd: readnii melodic.Rd: checkimg mni_img.Rd: nifti readrpi.Rd: readnii susan.Rd: readnii Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Package gcite

Current CRAN status: OK: 14

Package gifti

Current CRAN status: NOTE: 7, OK: 7

Version: 0.8.0
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package glassdoor

Current CRAN status: OK: 14

Package kirby21.base

Current CRAN status: OK: 14

Package kirby21.fmri

Current CRAN status: OK: 14

Package kirby21.t1

Current CRAN status: OK: 14

Package leanpubr

Current CRAN status: OK: 14

Package matlabr

Current CRAN status: OK: 14

Package mscstts

Current CRAN status: NOTE: 4, OK: 10

Version: 0.6.3
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: ms_list_voices.Rd: GET ms_synthesize.Rd: POST Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Package neurobase

Current CRAN status: ERROR: 1, NOTE: 4, OK: 10

Version: 1.32.4
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: copyNIfTIHeader.Rd: dropImageDimension, nifti datatype.Rd: convert.datatype, convert.bitpix double_ortho.Rd: orthographic ensure_array.Rd: nifti fast_readnii.Rd: readNifti, drop_img_dim img_list_to_ts.Rd: nifti img_ts_to_df.Rd: nifti img_ts_to_list.Rd: nifti img_ts_to_matrix.Rd: nifti ortho2.Rd: orthographic random_nifti.Rd: nifti readNIfTI2.Rd: readNIfTI, drop_img_dim remake_img.Rd: nifti replace_dropped_dimensions.Rd: nifti rescale_img.Rd: drop_img_dim tempimg.Rd: drop_img_dim writeNIfTI2.Rd: writeNIfTI, drop_img_dim write_nifti.Rd: writeNifti Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Version: 1.32.4
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘neurobase.Rmd’ using rmarkdown --- finished re-building ‘neurobase.Rmd’ --- re-building ‘nifti_basics.Rmd’ using rmarkdown --- finished re-building ‘nifti_basics.Rmd’ --- re-building ‘simple_io.Rmd’ using rmarkdown trying URL 'https://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/T1W.nii.gz' Quitting from simple_io.Rmd:30-37 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `download.file()`: ! cannot open URL 'https://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/T1W.nii.gz' --- Backtrace: ▆ 1. └─utils::download.file(url, destfile = t1_file) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'simple_io.Rmd' failed with diagnostics: cannot open URL 'https://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/T1W.nii.gz' --- failed re-building ‘simple_io.Rmd’ SUMMARY: processing the following file failed: ‘simple_io.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-macos-arm64

Package neurohcp

Current CRAN status: OK: 15

Package rscopus

Current CRAN status: OK: 15

Package stapler

Current CRAN status: OK: 15

Package stepcount

Current CRAN status: OK: 15

Package WhiteStripe

Current CRAN status: NOTE: 4, OK: 10

Version: 2.4.3
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: download_img_data.Rd: img_data smooth_hist.Rd: gam whitestripe_ind_to_mask.Rd: writeNIfTI Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64