CRAN Package Check Results for Maintainer ‘John Muschelli <muschellij2 at gmail.com>’

Last updated on 2026-08-13 11:51:47 CEST.

Package	OK	NOTE	ERROR
actibase	13
actinet	13
actiread	13
asleep	12		1
brainR	11	2
cforward	13
cifti	13
diffr	13
freesurfer	11	2
fslr	11	2
gcite	13
gifti	13
glassdoor	13
kirby21.base	11	2
kirby21.fmri	11	2
kirby21.t1	11	2
mapnhanespa	13
matlabr	13
mscstts	13
neurobase	8	5
neurohcp	13
rscopus	8	5
stapler	11	2
stepcount	11		2
walking	13
WhiteStripe	11	2

Package actibase

Current CRAN status: OK: 13

Package actinet

Current CRAN status: OK: 13

Package actiread

Current CRAN status: OK: 13

Package asleep

Current CRAN status: OK: 12, ERROR: 1

Version: 0.1.0
Check: tests
Result: ERROR Running ‘testthat.R’ [216s/153s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > library(testthat) > library(asleep) > > asleep:::cleanup_uv_lock_files( + c(".", tempdir(), dirname(tempdir())) + ) > testthat::test_check("asleep") Downloading uv...Done! Downloading cpython-3.8.20-macos-aarch64-none (download) (16.6MiB) Downloaded cpython-3.8.20-macos-aarch64-none (download) Building antlr4-python3-runtime==4.9.3 Building importlib==1.0.4 Updating https://github.com/muschellij2/asleep.git (HEAD) Downloading numba (2.5MiB) Downloading llvmlite (27.4MiB) Downloading pillow (3.2MiB) Downloading sympy (5.9MiB) Downloading pandas (10.2MiB) Downloading transforms3d (1.3MiB) Downloading torch (59.3MiB) Downloading matplotlib (7.0MiB) Downloading fonttools (2.6MiB) Built importlib==1.0.4 Downloading networkx (2.0MiB) Downloading scipy (27.5MiB) Downloading numpy (13.2MiB) Downloading statsmodels (9.6MiB) Built antlr4-python3-runtime==4.9.3 Downloading torchvision (1.6MiB) Downloaded transforms3d Downloading scikit-learn (7.2MiB) Downloaded torchvision Downloaded pillow Downloaded fonttools Building pyyaml==6.0.3 Downloaded networkx Downloaded numba Downloaded sympy Downloaded matplotlib Downloaded scikit-learn Downloaded pandas Downloaded numpy Downloaded statsmodels Downloaded scipy Downloaded llvmlite Updated https://github.com/muschellij2/asleep.git (4916a50c61dfe513a04ab340da3bfc4bd93dc96d) Building asleep @ git+https://github.com/muschellij2/asleep.git@4916a50c61dfe513a04ab340da3bfc4bd93dc96d Built asleep @ git+https://github.com/muschellij2/asleep.git@4916a50c61dfe513a04ab340da3bfc4bd93dc96d Downloaded torch Built pyyaml==6.0.3 Installed 50 packages in 634ms Checking Data File is:/Volumes/Builds/packages/big-sur-arm64/results/4.5/asleep.Rcheck/asleep/extdata/example_sleep.csv.gz Downloading models if not already present Downloading https://github.com/OxWearables/asleep/releases/download/0.4.12/ssl.joblib.lzma... Saved to /Users/rbuild/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/eHbMuLIg36SP6Pz_/lib/python3.8/site-packages/asleep/ssl.joblib.lzma Caching ssl-wearables repository... Downloading: "https://github.com/OxWearables/ssl-wearables/zipball/v1.0.0" to /Users/rbuild/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/eHbMuLIg36SP6Pz_/lib/python3.8/site-packages/asleep/torch_hub_cache/v1.0.0.zip Caching SleepNet repository and weights... Downloading: "https://github.com/OxWearables/asleep/zipball/main" to /Users/rbuild/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/eHbMuLIg36SP6Pz_/lib/python3.8/site-packages/asleep/torch_hub_cache/main.zip Downloading: "https://github.com/OxWearables/asleep/releases/download/0.4.9/sleepnet_apr_16_2024.mdl" to /Users/rbuild/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/eHbMuLIg36SP6Pz_/lib/python3.8/site-packages/asleep/torch_hub_cache/checkpoints/sleepnet_apr_16_2024.mdl 0%| | 0.00/232M [00:00<?, ?B/s] 4%|▎ | 8.38M/232M [00:00<00:02, 85.9MB/s] 7%|▋ | 16.6M/232M [00:00<00:06, 32.8MB/s] 9%|▉ | 21.4M/232M [00:00<00:07, 27.9MB/s] 13%|█▎ | 30.1M/232M [00:01<00:07, 27.5MB/s] 17%|█▋ | 40.0M/232M [00:01<00:05, 40.0MB/s] 20%|█▉ | 45.6M/232M [00:01<00:08, 22.1MB/s] 22%|██▏ | 50.1M/232M [00:02<00:08, 21.6MB/s] 26%|██▌ | 60.1M/232M [00:02<00:06, 25.8MB/s] 30%|██▉ | 69.4M/232M [00:02<00:04, 34.9MB/s] 32%|███▏ | 74.6M/232M [00:02<00:05, 30.8MB/s] 35%|███▍ | 80.1M/232M [00:02<00:05, 28.5MB/s] 39%|███▉ | 90.0M/232M [00:03<00:03, 39.8MB/s] 41%|████ | 95.5M/232M [00:03<00:04, 34.4MB/s] 43%|████▎ | 100M/232M [00:03<00:04, 29.8MB/s] 47%|████▋ | 109M/232M [00:03<00:03, 40.5MB/s] 49%|████▉ | 115M/232M [00:03<00:03, 34.0MB/s] 52%|█████▏ | 120M/232M [00:04<00:03, 30.3MB/s] 55%|█████▍ | 127M/232M [00:04<00:02, 37.6MB/s] 57%|█████▋ | 132M/232M [00:04<00:03, 29.3MB/s] 60%|█████▉ | 139M/232M [00:04<00:02, 36.5MB/s] 62%|██████▏ | 144M/232M [00:04<00:03, 30.4MB/s] 65%|██████▍ | 150M/232M [00:05<00:03, 26.4MB/s] 67%|██████▋ | 157M/232M [00:05<00:02, 32.6MB/s] 69%|██████▉ | 161M/232M [00:05<00:02, 27.5MB/s] 72%|███████▏ | 168M/232M [00:05<00:01, 35.8MB/s] 74%|███████▍ | 173M/232M [00:05<00:02, 30.4MB/s] 78%|███████▊ | 180M/232M [00:06<00:01, 28.0MB/s] 80%|████████ | 186M/232M [00:06<00:01, 33.8MB/s] 82%|████████▏ | 191M/232M [00:06<00:01, 27.6MB/s] 85%|████████▍ | 197M/232M [00:06<00:01, 34.3MB/s] 87%|████████▋ | 202M/232M [00:06<00:01, 25.4MB/s] 90%|████████▉ | 208M/232M [00:07<00:00, 32.2MB/s] 91%|█████████▏| 212M/232M [00:07<00:01, 17.5MB/s] 94%|█████████▍| 219M/232M [00:07<00:00, 23.7MB/s] 96%|█████████▌| 224M/232M [00:08<00:00, 22.3MB/s] 99%|█████████▉| 230M/232M [00:08<00:00, 16.1MB/s] 100%|██████████| 232M/232M [00:08<00:00, 28.0MB/s]Parsing raw data All models downloaded successfully. Lowpass filter... Skipping lowpass filter: data sample rate 30 too low for cutoff rate 20 Lowpass filter... Done! (0.00s) Gravity calibration... Gravity calibration... Done! (0.04s) Resampling... Resampling... Done! (0.09s) /Users/rbuild/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/eHbMuLIg36SP6Pz_/lib/python3.8/site-packages/asleep/utils.py:44: UserWarning: Could not infer format, so each element will be parsed individually, falling back to `dateutil`. To ensure parsing is consistent and as-expected, please specify a format. data = pd.read_csv( {'WearTime(days)': 0.1666662808564815, 'NonwearTime(days)': 0.0, 'NumNonwearEpisodes': 0} Time shift applied: 0 hours Raw data file saved to: /Volumes/Temp/tmp/RtmpBeY8RZ/file1827d58cfddb8/raw.csv Info data file saved to: /Volumes/Temp/tmp/RtmpBeY8RZ/file1827d58cfddb8/info.json time x y z non_wear 0 2000-01-04 20:00:00.000000000 -0.704000 0.413000 -0.540000 False 1 2000-01-04 20:00:00.033333333 -0.720795 0.419000 -0.561667 False 2 2000-01-04 20:00:00.066666666 -0.665154 0.428846 -0.578590 False 3 2000-01-04 20:00:00.100000000 -0.698000 0.434000 -0.525000 False 4 2000-01-04 20:00:00.133333333 -0.674051 0.417308 -0.575385 False Transforming data for model input Data shape for data2model: (480, 3, 900) Data shape for times: (480,) Data shape for nonwear: (480,) Detecting sleep windows args$outdir/Volumes/Temp/tmp/RtmpBeY8RZ/file1827d58cfddb8 ssl_sleep_path: /Volumes/Temp/tmp/RtmpBeY8RZ/file1827d58cfddb8/ssl_sleep.npy, exists:FALSE data2model array([[[-0.704 , -0.72079488, -0.66515385, ..., -0.69130774, -0.69115383, -0.6903333 ], [ 0.413 , 0.419 , 0.42884615, ..., 0.42430774, 0.42807678, 0.44416667], [-0.54 , -0.56166666, -0.57858971, ..., -0.55976925, -0.59274354, -0.61691666]], [[-0.689 , -0.61469231, -0.58484615, ..., -0.62961541, -0.62735884, -0.62341669], [ 0.469 , 0.42923077, 0.43343586, ..., 0.466 , 0.46 , 0.45547223], [-0.648 , -0.55720514, -0.58207693, ..., -0.57223075, -0.57330765, -0.56950002]], [[-0.625 , -0.62246154, -0.63430771, ..., -0.73707666, -0.73812797, -0.74825001], [ 0.457 , 0.45953846, 0.46923078, ..., 0.18476925, 0.19420501, 0.20291666], [-0.56 , -0.548 , -0.56430771, ..., -0.64523075, -0.6363847 , -0.65150002]], ..., [[-0.032 , -0.032 , -0.032 , ..., -0.032 , -0.032 , -0.032 ], [-0.123 , -0.123 , -0.123 , ..., -0.123 , -0.123 , -0.123 ], [-0.988 , -0.988 , -0.988 , ..., -0.988 , -0.988 , -0.988 ]], [[-0.032 , -0.032 , -0.032 , ..., -0.032 , -0.032 , -0.032 ], [-0.123 , -0.123 , -0.123 , ..., -0.123 , -0.123 , -0.123 ], [-0.988 , -0.988 , -0.988 , ..., -0.988 , -0.988 , -0.988 ]], [[-0.032 , -0.032 , -0.032 , ..., -0.032 , -0.032 , -0.032 ], [-0.123 , -0.123 , -0.123 , ..., -0.123 , -0.123 , -0.123 ], [-0.988 , -0.988 , -0.988 , ..., -0.988 , -0.988 , -0.988 ]]]) non_wear array([False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False, False]) Data2model file saved to: /Volumes/Temp/tmp/RtmpBeY8RZ/file1827d58cfddb8/data2model.npy Times file saved to: /Volumes/Temp/tmp/RtmpBeY8RZ/file1827d58cfddb8/times.npy Non-wear file saved to: /Volumes/Temp/tmp/RtmpBeY8RZ/file1827d58cfddb8/non_wear.npy Downloading https://github.com/OxWearables/asleep/releases/download/0.4.12/ssl.joblib.lzma... prediction set sample count: 480 Using local /Users/rbuild/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/eHbMuLIg36SP6Pz_/lib/python3.8/site-packages/asleep/torch_hub_cache/OxWearables_ssl-wearables_v1.0.0 0%| | 0/1 [00:00<?, ?it/s] 100%|██████████| 1/1 [00:22<00:00, 22.32s/it]Running SleepNet SleepNet outdir: /Volumes/Temp/tmp/RtmpBeY8RZ/file1827d58cfddb8 Upstream ssl model path: /Users/rbuild/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/eHbMuLIg36SP6Pz_/lib/python3.8/site-packages/asleep/ssl.joblib.lzma, exists: TRUE SleepNet weight URL: https://github.com/OxWearables/asleep/releases/download/0.4.9/sleepnet_apr_16_2024.mdl SleepNet artifact ssl_sleep: /Volumes/Temp/tmp/RtmpBeY8RZ/file1827d58cfddb8/ssl_sleep.npy, exists: TRUE SleepNet artifact y_pred: /Volumes/Temp/tmp/RtmpBeY8RZ/file1827d58cfddb8/y_pred.npy, exists: FALSE SleepNet artifact pred_prob: /Volumes/Temp/tmp/RtmpBeY8RZ/file1827d58cfddb8/pred_prob.npy, exists: FALSE SleepNet artifact x_npy: /Volumes/Temp/tmp/RtmpBeY8RZ/file1827d58cfddb8/X.npy, exists: TRUE SleepNet artifact x_npy_gz: /Volumes/Temp/tmp/RtmpBeY8RZ/file1827d58cfddb8/X.npy.gz, exists: FALSE SleepNet artifact npid: /Volumes/Temp/tmp/RtmpBeY8RZ/file1827d58cfddb8/npid.npy, exists: TRUE (480,) (array([0., 2., 3.]), array([ 79, 45, 356])) /Users/rbuild/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/eHbMuLIg36SP6Pz_/lib/python3.8/site-packages/asleep/sleepnet.py:207: Hydra14MigrationWarning: The version_base parameter is not specified. Hydra will assume defaults for version 1.1. Hydra 1.4 will remove this compatibility behavior. Before upgrading to Hydra 1.4, set version_base="1.3" and test your application. See https://hydra.cc/docs/upgrades/1.3_to_1.4/prepare_for_1_4/ for preparation instructions. initialize(config_path="conf") pytorch device: mps setting up cnn access local repo Loading local weight from /Users/rbuild/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/eHbMuLIg36SP6Pz_/lib/python3.8/site-packages/asleep/torch_hub_cache/checkpoints/sleepnet_apr_16_2024.mdl /Users/rbuild/Library/Caches/org.R-project.R/R/reticulate/uv/cache/archive-v0/eHbMuLIg36SP6Pz_/lib/python3.8/site-packages/asleep/torch_hub_cache/OxWearables_asleep_main/hubconf.py:22: FutureWarning: You are using `torch.load` with `weights_only=False` (the current default value), which uses the default pickle module implicitly. It is possible to construct malicious pickle data which will execute arbitrary code during unpickling (See https://github.com/pytorch/pytorch/blob/main/SECURITY.md#untrusted-models for more details). In a future release, the default value for `weights_only` will be flipped to `True`. This limits the functions that could be executed during unpickling. Arbitrary objects will no longer be allowed to be loaded via this mode unless they are explicitly allowlisted by the user via `torch.serialization.add_safe_globals`. We recommend you start setting `weights_only=True` for any use case where you don't have full control of the loaded file. Please open an issue on GitHub for any issues related to this experimental feature. state_dict = torch.load(local_weight_path, Saving _problems/test-asleep-20.R [ FAIL 1 | WARN 0 | SKIP 0 | PASS 67 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-asleep.R:20:5'): asleep model works ──────────────────────────── <python.builtin.RuntimeError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition> Error in `py_call_impl(callable, call_args$unnamed, call_args$named)`: RuntimeError: MPS backend out of memory (MPS allocated: 8.00 MB, other allocations: 272.00 KB, max allowed: 1.70 GB). Tried to allocate 256 bytes on shared pool. Use PYTORCH_MPS_HIGH_WATERMARK_RATIO=0.0 to disable upper limit for memory allocations (may cause system failure). Run `reticulate::py_last_error()` for details. Backtrace: ▆ 1. └─asleep::asleep(file = file, verbose = 2L, force_download = TRUE) at test-asleep.R:20:5 2. └─reticulate (local) start_sleep_net(...) 3. └─reticulate:::py_call_impl(callable, call_args$unnamed, call_args$named) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 67 ] Error: ! Test failures. Execution halted /Users/rbuild/Library/Caches/org.R-project.R/R/reticulate/uv/python/cpython-3.8.20-macos-aarch64-none/lib/python3.8/multiprocessing/resource_tracker.py:216: UserWarning: resource_tracker: There appear to be 1 leaked semaphore objects to clean up at shutdown warnings.warn('resource_tracker: There appear to be %d ' Flavor: r-oldrel-macos-arm64

Package brainR

Current CRAN status: OK: 11, NOTE: 2

Version: 1.7.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘John Muschelli <muschellij2@gmail.com>’ Problems when reading CITATION file: Replacing special names ‘.Names’ is deprecated; use ‘names’ instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package cforward

Current CRAN status: OK: 13

Package cifti

Current CRAN status: OK: 13

Package diffr

Current CRAN status: OK: 13

Package freesurfer

Current CRAN status: OK: 11, NOTE: 2

Version: 1.8.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘John Muschelli <muschellij2@gmail.com>’ Problems when reading CITATION file: Replacing special names ‘.Names’ is deprecated; use ‘names’ instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package fslr

Current CRAN status: OK: 11, NOTE: 2

Version: 2.27.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘John Muschelli <muschellij2@gmail.com>’ Problems when reading CITATION file: Replacing special names ‘.Names’ is deprecated; use ‘names’ instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package gcite

Current CRAN status: OK: 13

Package gifti

Current CRAN status: OK: 13

Package glassdoor

Current CRAN status: OK: 13

Package kirby21.base

Current CRAN status: OK: 11, NOTE: 2

Version: 1.7.3
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘John Muschelli <muschellij2@gmail.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: person(given = "John", family = "Muschelli", role = c("aut", "cre"), email = "muschellij2@gmail.com") as necessary. Problems when reading CITATION file: Replacing special names ‘.Names’ is deprecated; use ‘names’ instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package kirby21.fmri

Current CRAN status: OK: 11, NOTE: 2

Version: 1.8.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘John Muschelli <muschellij2@gmail.com>’ Problems when reading CITATION file: Replacing special names ‘.Names’ is deprecated; use ‘names’ instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package kirby21.t1

Current CRAN status: OK: 11, NOTE: 2

Version: 1.8.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘John Muschelli <muschellij2@gmail.com>’ Problems when reading CITATION file: Replacing special names ‘.Names’ is deprecated; use ‘names’ instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package mapnhanespa

Current CRAN status: OK: 13

Package matlabr

Current CRAN status: OK: 13

Package mscstts

Current CRAN status: OK: 13

Package neurobase

Current CRAN status: OK: 8, NOTE: 5

Version: 1.34.0
Check: R code for possible problems
Result: NOTE Found calls to structure() using deprecated special names: neurobase/tests/testthat/test-cog.R (.Names: 1) '.Names' should be changed to 'names'. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Package neurohcp

Current CRAN status: OK: 13

Package rscopus

Current CRAN status: OK: 8, NOTE: 5

Version: 0.9.0
Check: R code for possible problems
Result: NOTE Found calls to structure() using deprecated special names: rscopus/R/replace_non_ascii.R (.Names: 1) '.Names' should be changed to 'names'. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Package stapler

Current CRAN status: OK: 11, NOTE: 2

Version: 0.8.0
Flags: --no-vignettes
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘John Muschelli <muschellij2@gmail.com>’ Problems when reading CITATION file: Replacing special names ‘.Names’ is deprecated; use ‘names’ instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package stepcount

Current CRAN status: OK: 11, ERROR: 2

Version: 0.5.0
Check: tests
Result: ERROR Running ‘testthat.R’ [16s/30s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > library(testthat) > library(stepcount) > > testthat::test_check("stepcount") Downloading uv...Done! Downloading cpython-3.10.20-macos-aarch64-none (download) (24.7MiB) Downloaded cpython-3.10.20-macos-aarch64-none (download) Downloading llvmlite (27.4MiB) Downloading torch (50.7MiB) Downloading numba (2.5MiB) Downloading pandas (10.3MiB) Downloading matplotlib (7.0MiB) Downloading numpy (13.2MiB) Downloading pillow (4.6MiB) Downloading statsmodels (9.6MiB) Downloading torchvision (1.2MiB) Downloading fonttools (2.8MiB) Downloading scipy (27.4MiB) Downloading transforms3d (1.3MiB) Downloaded torchvision Downloaded transforms3d Downloaded fonttools Downloaded numba Downloaded pillow Downloaded pandas Downloaded matplotlib Downloading scikit-learn (7.3MiB) Downloaded statsmodels Downloaded scikit-learn Downloaded numpy Downloaded scipy Downloaded llvmlite Downloaded torch Installed 36 packages in 233ms Error in py_get_attr(x, name, FALSE) : AttributeError: module 'stepcount' has no attribute 'stepcount' Run `reticulate::py_last_error()` for details. -- Python Exception Message ---------------------------------------------------- -- R Traceback ----------------------------------------------------------------- AttributeError: module 'stepcount' has no attribute 'stepcount' x 1. \-stepcount::sc_read(file) at test-sc_read.R:4:5 2. \-stepcount:::stepcount_base() 3. +-base::try(...) 4. | \-base::tryCatch(...) 5. | \-base (local) tryCatchList(expr, classes, parentenv, handlers) 6. | \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 7. | \-base (local) doTryCatch(return(expr), name, parentenv, handler) 8. +-sc$stepcount 9. \-reticulate:::`$.python.builtin.module`(sc, "stepcount") 10. \-reticulate::py_get_attr(x, name, FALSE) See `reticulate::py_last_error()$r_trace$full_call` for more details. This message is displayed once per session. Saving _problems/test-sc_read-4.R [ FAIL 1 | WARN 0 | SKIP 2 | PASS 42 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • On CRAN (2): 'test-full_run.R:10:3', 'test-full_run.R:51:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-sc_read.R:4:5'): reading in a file works ─────────────────────── <python.builtin.OSError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition> Error in `py_module_import(module, convert = convert)`: OSError: Could not find/load shared object file Run `reticulate::py_last_error()` for details. Backtrace: ▆ 1. └─stepcount::sc_read(file) at test-sc_read.R:4:5 2. └─stepcount:::stepcount_base() 3. └─reticulate::import("stepcount.stepcount") 4. └─reticulate:::py_module_import(module, convert = convert) [ FAIL 1 | WARN 0 | SKIP 2 | PASS 42 ] Error: ! Test failures. Execution halted Flavor: r-release-macos-arm64

Version: 0.5.0
Check: tests
Result: ERROR Running ‘testthat.R’ [16s/36s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > library(testthat) > library(stepcount) > > testthat::test_check("stepcount") Downloading cpython-3.10.20-macos-aarch64-none (download) (24.7MiB) Downloaded cpython-3.10.20-macos-aarch64-none (download) Downloading torchvision (1.2MiB) Downloading fonttools (2.8MiB) Downloading scikit-learn (7.3MiB) Downloading pillow (4.6MiB) Downloading statsmodels (9.6MiB) Downloading scipy (27.4MiB) Downloading numpy (13.2MiB) Downloading pandas (10.3MiB) Downloading numba (2.5MiB) Downloading torch (50.7MiB) Downloading llvmlite (27.4MiB) Downloading matplotlib (7.0MiB) Downloaded torchvision Downloaded fonttools Downloaded pillow Downloaded numba Downloaded scikit-learn Downloaded matplotlib Downloaded numpy Downloaded pandas Downloaded statsmodels Downloaded scipy Downloaded llvmlite Downloaded torch Installed 36 packages in 604ms Error in py_get_attr(x, name, FALSE) : AttributeError: module 'stepcount' has no attribute 'stepcount' Run `reticulate::py_last_error()` for details. -- Python Exception Message ---------------------------------------------------- -- R Traceback ----------------------------------------------------------------- AttributeError: module 'stepcount' has no attribute 'stepcount' x 1. \-stepcount::sc_read(file) at test-sc_read.R:4:5 2. \-stepcount:::stepcount_base() 3. +-base::try(...) 4. | \-base::tryCatch(...) 5. | \-base (local) tryCatchList(expr, classes, parentenv, handlers) 6. | \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 7. | \-base (local) doTryCatch(return(expr), name, parentenv, handler) 8. +-sc$stepcount 9. \-reticulate:::`$.python.builtin.module`(sc, "stepcount") 10. \-reticulate::py_get_attr(x, name, FALSE) See `reticulate::py_last_error()$r_trace$full_call` for more details. This message is displayed once per session. Saving _problems/test-sc_read-4.R [ FAIL 1 | WARN 0 | SKIP 2 | PASS 42 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • On CRAN (2): 'test-full_run.R:10:3', 'test-full_run.R:51:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-sc_read.R:4:5'): reading in a file works ─────────────────────── <python.builtin.OSError/python.builtin.Exception/python.builtin.BaseException/python.builtin.object/error/condition> Error in `py_module_import(module, convert = convert)`: OSError: Could not find/load shared object file Run `reticulate::py_last_error()` for details. Backtrace: ▆ 1. └─stepcount::sc_read(file) at test-sc_read.R:4:5 2. └─stepcount:::stepcount_base() 3. └─reticulate::import("stepcount.stepcount") 4. └─reticulate:::py_module_import(module, convert = convert) [ FAIL 1 | WARN 0 | SKIP 2 | PASS 42 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-macos-arm64

Package walking

Current CRAN status: OK: 13

Package WhiteStripe

Current CRAN status: OK: 11, NOTE: 2

Version: 2.5.0
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘John Muschelli <muschellij2@gmail.com>’ Problems when reading CITATION file: Replacing special names ‘.Names’ is deprecated; use ‘names’ instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc