CRAN Package Check Results for Package neurobase

Last updated on 2025-04-03 17:49:53 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.32.4	8.58	201.23	209.81	NOTE
r-devel-linux-x86_64-debian-gcc	1.32.4	5.61	132.08	137.69	NOTE
r-devel-linux-x86_64-fedora-clang	1.32.4			341.36	OK
r-devel-linux-x86_64-fedora-gcc	1.32.4			367.86	OK
r-devel-macos-arm64	1.32.4			132.00	ERROR
r-devel-macos-x86_64	1.32.4			301.00	OK
r-devel-windows-x86_64	1.32.4	10.00	615.00	625.00	NOTE
r-patched-linux-x86_64	1.32.4	10.66	194.46	205.12	NOTE
r-release-linux-x86_64	1.32.4	7.87	188.21	196.08	OK
r-release-macos-arm64	1.32.4			137.00	OK
r-release-macos-x86_64	1.32.4			211.00	OK
r-release-windows-x86_64	1.32.4	10.00	389.00	399.00	OK
r-oldrel-macos-arm64	1.32.4				OK
r-oldrel-macos-x86_64	1.32.4			370.00	OK
r-oldrel-windows-x86_64	1.32.4	14.00	429.00	443.00	OK

Check Details

Version: 1.32.4
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: copyNIfTIHeader.Rd: dropImageDimension, nifti datatype.Rd: convert.datatype, convert.bitpix double_ortho.Rd: orthographic ensure_array.Rd: nifti fast_readnii.Rd: readNifti, drop_img_dim img_list_to_ts.Rd: nifti img_ts_to_df.Rd: nifti img_ts_to_list.Rd: nifti img_ts_to_matrix.Rd: nifti ortho2.Rd: orthographic random_nifti.Rd: nifti readNIfTI2.Rd: readNIfTI, drop_img_dim remake_img.Rd: nifti replace_dropped_dimensions.Rd: nifti rescale_img.Rd: drop_img_dim tempimg.Rd: drop_img_dim writeNIfTI2.Rd: writeNIfTI, drop_img_dim write_nifti.Rd: writeNifti Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Version: 1.32.4
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘neurobase.Rmd’ using rmarkdown --- finished re-building ‘neurobase.Rmd’ --- re-building ‘nifti_basics.Rmd’ using rmarkdown --- finished re-building ‘nifti_basics.Rmd’ --- re-building ‘simple_io.Rmd’ using rmarkdown trying URL 'https://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/T1W.nii.gz' Quitting from simple_io.Rmd:30-37 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `download.file()`: ! cannot open URL 'https://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/T1W.nii.gz' --- Backtrace: ▆ 1. └─utils::download.file(url, destfile = t1_file) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'simple_io.Rmd' failed with diagnostics: cannot open URL 'https://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/T1W.nii.gz' --- failed re-building ‘simple_io.Rmd’ SUMMARY: processing the following file failed: ‘simple_io.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-macos-arm64