CRAN Package Check Results for Package freesurfer

Last updated on 2026-10-17 11:51:18 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.9.0	7.11	178.49	185.60	OK
r-devel-linux-x86_64-debian-gcc	1.9.0	5.10	118.34	123.44	OK
r-devel-linux-x86_64-fedora-clang	1.9.0			115.94	OK
r-devel-linux-x86_64-fedora-gcc	1.9.0			117.17	OK
r-devel-windows-x86_64	1.9.0	9.00	158.00	167.00	OK
r-patched-linux-x86_64	1.9.0	7.47	166.49	173.96	OK
r-release-linux-x86_64	1.9.0	7.57	165.23	172.80	OK
r-release-macos-arm64	1.9.0	2.00	40.00	42.00	OK
r-release-macos-x86_64	1.9.0	5.00	250.00	255.00	OK
r-release-windows-x86_64	1.9.0	9.00	131.00	140.00	ERROR
r-oldrel-macos-arm64	1.9.0	3.00	55.00	58.00	OK
r-oldrel-macos-x86_64	1.9.0	5.00	245.00	250.00	OK
r-oldrel-windows-x86_64	1.9.0	11.00	184.00	195.00	OK

Check Details

Version: 1.9.0
Check: tests
Result: ERROR Running 'testthat.R' [27s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(withr) > library(freesurfer) > > test_check("freesurfer") Starting 2 test processes. > test-mri_convert.R: v Converting from NIfTI to FreeSurfer format > test-mri_convert.R: i nii.gz -> mgz > test-mri_convert.R: v Converting from NIfTI to FreeSurfer format > test-mri_convert.R: i nii.gz -> mgz > test-mris_euler_number.R: v Calculating Euler number for surface > test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c679e342a.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c75ba549d.txt > test-mris_euler_number.R: v Euler number calculation completed > test-mris_euler_number.R: i Results: euler = 2 > test-mris_euler_number.R: v Calculating Euler number for surface > test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c17977b11.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c358ec86.txt > test-mris_euler_number.R: v Euler number calculation completed > test-mris_euler_number.R: i Results: euler = 2 > test-mris_euler_number.R: v Calculating Euler number for surface > test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c24da426b.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c6b1b3e14.txt > test-mris_euler_number.R: v Euler number calculation completed > test-mris_euler_number.R: i Results: euler = 2 > test-mris_euler_number.R: v Calculating Euler number for surface > test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226ceb57bf0.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c4e08894.txt > test-mris_euler_number.R: v Euler number calculation completed > test-mris_euler_number.R: i Results: euler = 2 > test-mris_euler_number.R: v Calculating Euler number for surface > test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c36427498.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c1f2748f6.txt > test-mris_euler_number.R: v Calculating Euler number for surface > test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c108e3053.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c551a10ae.txt > test-mris_euler_number.R: v Euler number calculation completed > test-mris_euler_number.R: i Results: euler number = 2 > test-mris_euler_number.R: v Calculating Euler number for surface > test-mris_euler_number.R: i Input file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c74892e50.mgz Output file: D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c66592052.txt > test-recon_all.R: mock_fs/ recon-all -subjid file6226c219d587e -sd "D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c79467c08" -i D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c79467c08/test_subject\file6226c219d587e.nii -sd "D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c79467c08" > test-reconner.R: mock/path recon-all -subjid subject01 -i D:\RCompile\CRANpkg\local\4.6\freesurfer.Rcheck\tests\testthat\input.nii -all > test-reconner.R: mock/path recon-all -subjid subject01 -sd "D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c2388d44" -i D:\RCompile\CRANpkg\local\4.6\freesurfer.Rcheck\tests\testthat\input.nii -all > test-reconner.R: mock/path recon-all -subjid input_file -sd "D:\temp\2026_10_14_01_50_00_30378\RtmpyOJfeC\file6226c757b7d35" -i D:\RCompile\CRANpkg\local\4.6\freesurfer.Rcheck\tests\testthat\input_file.nii -all > test-tracker.R: Error: ! testthat subprocess exited in file 'test-tracker.R'. Caused by error: ! R session crashed with exit code -1073741819 Backtrace: ▆ 1. └─testthat::test_check("freesurfer") 2. └─testthat::test_dir(...) 3. └─testthat:::test_files(...) 4. └─testthat:::test_files_parallel(...) 5. ├─withr::with_dir(...) 6. │ └─base::force(code) 7. ├─testthat::with_reporter(...) 8. │ └─base::tryCatch(...) 9. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 10. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 11. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler) 12. └─testthat:::parallel_event_loop_chunky(queue, reporters, ".") 13. └─queue$poll(Inf) 14. └─base::lapply(...) 15. └─testthat (local) FUN(X[[i]], ...) 16. └─private$handle_error(msg, i) 17. └─cli::cli_abort(...) 18. └─rlang::abort(...) Execution halted Flavor: r-release-windows-x86_64