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survival: Survival Analysis

Contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.

Version: 3.6-4
Priority: recommended
Depends: R (≥ 3.5.0)
Imports: graphics, Matrix, methods, splines, stats, utils
Published: 2024-04-24
Author: Terry M Therneau [aut, cre], Thomas Lumley [ctb, trl] (original S->R port and R maintainer until 2009), Atkinson Elizabeth [ctb], Crowson Cynthia [ctb]
Maintainer: Terry M Therneau <therneau.terry at mayo.edu>
License: LGPL-2 | LGPL-2.1 | LGPL-3 [expanded from: LGPL (≥ 2)]
Copyright: see file COPYRIGHTS
URL: https://github.com/therneau/survival
NeedsCompilation: yes
Citation: survival citation info
Materials: NEWS
In views: ClinicalTrials, Econometrics, Survival
CRAN checks: survival results

Documentation:

Reference manual: survival.pdf
Vignettes: Adjusted Survival Curves
Approximating a Cox Model
Multi-state models and competing risks
Concordance
Matrix exponentials
Survival package methods
Multi-state survival curves
Other vignettes
Population contrasts
Brier scores and the redistribute-to-the-right algorithm
Splines, plots, and interactions
The survival package
Roundoff error and tied times
Using Time Dependent Covariates
Validation

Downloads:

Package source: survival_3.6-4.tar.gz
Windows binaries: r-devel: survival_3.5-8.zip, r-release: survival_3.6-4.zip, r-oldrel: survival_3.6-4.zip
macOS binaries: r-release (arm64): survival_3.6-4.tgz, r-oldrel (arm64): survival_3.6-4.tgz, r-release (x86_64): survival_3.6-4.tgz, r-oldrel (x86_64): survival_3.6-4.tgz
Old sources: survival archive

Reverse dependencies:

Reverse depends: aCGH, AER, AF, ahaz, ahMLE, aisoph, APtools, BART, bayesDP, BayesianMediationA, BayesMixSurv, bayesSurv, bcfrailph, bcfrailphdv, BeQut, bhm, biostat3, blapsr, BMA, bpcp, BRACE, carcass, CaseCohortCoxSurvival, cchs, censored, CGEN, ClassifyR, cmprsk, coin, ComparisonSurv, compound.Cox, cond, contTimeCausal, Copula.Markov.survival, coxed, coxme, coxphSGD, coxphw, CoxR2, CPE, crrcbcv, crrSC, csampling, ctqr, cuRe, curephEM, currentSurvival, DCEtool, discfrail, distcomp, dnn, DOVE, DTAT, dtrSurv, dynpred, ebmstate, epiDisplay, epiR, EquiSurv, EstimationTools, eventTrack, EvidenceSynthesis, expertsurv, factorial2x2, FamEvent, fitdistrplus, flexrsurv, flexsurv, flexsurvcure, FlexVarJM, frailtyEM, frailtyHL, frailtyMMpen, frailtySurv, frequentistSSD, gamlss.cens, gcerisk, geecure, glmpath, globaltest, gmvjoint, GORCure, GSED, gte, haplo.ccs, HCmodelSets, hdbma, HybridMTest, iBST, icenReg, Icens, icensBKL, ICGOR, IDPSurvival, InferenceSMR, InformativeCensoring, interval, invGauss, iPath, IPCWK, ipcwswitch, IPDfromKM, ipflasso, isoSurv, iterativeBMAsurv, jlctree, JM, JMbayes, JMbayes2, JMH, joineR, joineRML, joint.Cox, JSM, kin.cohort, KMunicate, linERR, logicFS, LogicReg, LongCART, lpl, luca, MapGAM, marg, messina, mexhaz, mfp, miRecSurv, missDeaths, mixcure, mma, mmabig, mmc, ModTools, mRMRe, MST, mstate, multcomp, multipleNCC, multiridge, NADA, netcox, nftbart, nlreg, nltm, NPHMC, nricens, NSM3, oceCens, Oncofilterfast, OrdFacReg, ordinalgmifs, OTRselect, p3state.msm, packHV, pamr, parfm, partDSA, pch, penalized, PenCoxFrail, penPHcure, peperr, permGS, PHeval, PHInfiniteEstimates, PICBayes, plac, PRIMEplus, psbcGroup, PWEXP, PwrGSD, Qest, qrcm, qrcmNP, randomizeR, rbsurv, RcmdrPlugin.BWS1, RcmdrPlugin.BWS2, RcmdrPlugin.BWS3, RcmdrPlugin.DCE, RcmdrPlugin.survival, RegParallel, RelDists, relsurv, RISCA, risksetROC, RobustAFT, rprev, rstpm2, season, seawaveQ, selectiveInference, SemiCompRisks, seqDesign, SigCheck, SIMMS, simMSM, SimNPH, smcure, smoothHR, smoothSurv, snpStats, sox, speff2trial, SPREDA, spsurv, ssym, STAND, stepp, surrosurvROC, survAH, survBootOutliers, survC1, survcomp, survcompare, survexp.fr, survey, survIDINRI, survivalMPL, survivalSL, survivalsvm, survMisc, SurvRegCensCov, survRM2, survSNP, survstan, SurvTrunc, survtype, TH.data, threg, thregI, timereg, tLagInterim, tnet, TransModel, TwoArmSurvSim, uni.survival.tree, uniah, VAJointSurv, VEwaning, VEwaningVariant, vsd, xhaz, YPBP, YPPE
Reverse imports: ABSurvTDC, ActFrag, addhazard, adjSURVCI, adjustedCurves, aftgee, afthd, aftR2, afttest, AICcmodavg, allestimates, allMT, amt, ANF, ascii, autoReg, AutoScore, Ball, bamlss, base.rms, basecamb, bayesCT, BayesCTDesign, BayesFBHborrow, BayesSurvival, BayesSurvive, baytrends, beanz, BeSS, bestridge, BGPhazard, bigSurvSGD, binequality, BioPETsurv, biospear, BivRec, blockForest, BloodCancerMultiOmics2017, BNPdensity, boot.pval, bossR, BSGW, bujar, c060, calibmsm, CalibrationCurves, canceR, cancerGI, card, carSurv, Cascade, casebase, CaseBasedReasoning, casper, CatPredi, CauchyCP, causalCmprsk, ccostr, CenBAR, cenROC, censCov, censcyt, CeRNASeek, CFC, CFO, cforward, cg, chest, chngpt, chopsticks, CIEE, ciTools, clespr, clintools, cmprskcoxmsm, cmprskQR, coda4microbiome, CohortSurvival, cohorttools, compareGroups, CondiS, condSURV, consICA, controlTest, CopulaCenR, CoRpower, cotram, Counterfactual, CoxAIPW, CoxBcv, Coxmos, coxphf, coxrobust, coxrt, CP, CPsurv, CsChange, CSCNet, csmpv, CureAuxSP, CureDepCens, cutoff, CutpointsOEHR, cvwrapr, cyclomort, Cyclops, DCEmgmt, dcurves, debest, deeptrafo, DepCens, DeSousa2013, dipm, dirttee, diversityForest, drcSeedGerm, drcte, drgee, drugDemand, DWreg, DynForest, dynsurv, ecpc, EGRET, eha, EL2Surv, ELYP, em, ems, EnMCB, eoa3, epade, ePCR, Epi, EpiForsk, epiomics, epistasisGA, epitab, epoc, etm, etree, eventglm, eventPred, EventPredInCure, extrafrail, ezcox, familiar, FastJM, FHtest, fic, figuRes2, finalfit, FLORAL, fmrs, forsearch, GAGAs, gamlss, gbm, GDCRNATools, GEInter, genefilter, GenEst, gestate, GFDsurv, gfoRmula, ggparty, ggplot2.utils, ggquickeda, ggRandomForests, ggrisk, ggscidca, ggsurvfit, GJRM, glm.predict, glmmPen, glmnet, glmnetr, GNOSIS, GofCens, GPSCDF, graphPAF, gravity, greport, gsDesign2, GSgalgoR, gsMAMS, GSSTDA, GTDL, GWASinlps, GWASTools, gwasurvivr, HazardDiff, HCTDesign, HDJM, hdnom, hds, hesim, highMLR, HIMA, horseshoenlm, hrcomprisk, ICcalib, ICcforest, ICSKAT, idem, IDMIR, IMAS, imsig, incubate, iNETgrate, interactionRCS, ipred, ipw, ipwCoxCSV, IrregLong, iterativeBMAsurv, ivtools, ivygapSE, JLPM, jmBIG, JointAI, JointFPM, jomo, jskm, jsmodule, jstable, km.ci, kmi, KONPsurv, landest, Landmarking, landmulti, landpred, lava, lcmm, lilikoi, lillies, lodGWAS, longitudinalcascade, longROC, LTRCforests, LTRCtrees, mable, MachineShop, maczic, maftools, MAGNAMWAR, markovMSM, maxcombo, mboost, mccmeiv, MCPModBC, Mediana, meerva, merlin, MetabolicSurv, metaSurvival, mets, mfp2, MFSIS, mhazard, miceafter, miCoPTCM, MicrobiomeSurv, microsimulation, MiMIR, MiRKAT, miRspongeR, miWQS, mixPHM, mixtools, mlma, mlr, mlt, mlt.docreg, MMAD, mMARCH.AC, model4you, modeLLtest, mombf, moonBook, mpr, mratios, msaenet, msm, msmtools, MSstats, MTLR, muhaz, multiClust, multinma, multisite.accuracy, multiview, multtest, MXM, My.stepwise, NADA2, NetSAM, NNMIS, nnt, nparsurv, nph, NPHazardRate, nphPower, nphRCT, nsROC, numKM, obliqueRSF, ODS, omicsViewer, OneArm2stage, OneArmTTE, OneSampleLogRankTest, OptimalTiming, orthoDr, oscar, OSTE, otrKM, packDAMipd, palasso, PAmeasures, pammtools, party, partykit, pathwayPCA, pathwayTMB, pbatR, PBIR, PCLassoReg, pda, PDATK, PDN, pec, penalizedclr, pencal, permimp, personalized, Phase123, phenoTest, phers, plasma, pldamixture, plgraphics, plsmselect, plsRcox, PMAPscore, pmcalibration, polle, popEpi, postGGIR, powerSurvEpi, pre, precmed, predRupdate, prioritylasso, prodlim, ProSGPV, psBayesborrow, psbcSpeedUp, psborrow, PScr, pseval, psfmi, psichomics, PTE, PTERP, pubh, Publish, PWEALL, qgcomp, qgcompint, Qindex, QoLMiss, qris, QTOCen, quantreg, quickReg, R2Addhaz, RABR, randomGLM, rankhazard, RcmdrPlugin.KMggplot2, rcssci, reconstructKM, recurrentpseudo, regmedint, regplot, regport, ReIns, remiod, remss, reportRmd, reReg, rigr, riskRegression, RItools, RLassoCox, rms, rmsb, rmstcompsens, rnaEditr, RoBSA, rocTree, ROlogit, rolr, rpsftm, rstanarm, Rsurrogate, RTCGA, RTNsurvival, safestats, SAME, SCCS, SCFA, SCORNET, scRNAtools, SEERaBomb, semicmprskcoxmsm, SemiPar.depCens, sGBJ, sglg, shinyCox, shrink, SIDES, sievePH, SIGN, signatureSurvival, signeR, signifinder, sigsquared, sim.BA, simexaft, SimHaz, simIDM, simPH, simtrial, SIS, skpr, smcfcs, smdi, SMDIC, SMPracticals, sMSROC, SNPassoc, sp23design, spatsurv, spBayesSurv, spef, squant, ssMutPA, SSRMST, starnet, stdReg, StepReg, stpm, stratamatch, StratifiedMedicine, SubgrpID, success, SUMMER, Sunclarco, superpc, SuRF.vs, Surrogate, SurrogateOutcome, SurrogateTest, surrosurv, surv2sampleComp, survAUC, survAWKMT2, SurvCorr, survCurve, SurvDisc, survELtest, survex, SurvHiDim, survidm, survival.svb, survival666, survivalAnalysis, SurvivalClusteringTree, survivalMPLdc, survivalREC, SurvMetrics, SurvMI, survminer, survobj, survout, survParamSim, survRM2adapt, survRM2perm, survSens, SVMDO, SvyNom, synthpop, tableeasy, targeted, tauProcess, tdROC, tern, tfCox, ThresholdROCsurvival, tidyCDISC, tidycmprsk, TidyDensity, TimeVTree, tinyarray, tLagPropOdds, TNBC.CMS, TOmicsVis, TOP, tornado, trajmsm, tram, tramicp, TraMineRextras, transmdl, tranSurv, TreatmentSelection, trio, truncAIPW, TSDT, tsriadditive, TwoPhaseInd, TwoStepCLogit, vaccine, valorate, VarReg, VBJM, visR, vpc, VSOLassoBag, WCE, Wcompo, wcox, WGCNA, WINS, WLreg, WR, WRTDStidal, xlink, xpose4, YPmodelPhreg
Reverse suggests: agridat, ahw, aorsf, aplore3, arsenal, ARTool, atable, bayesplot, BB, BCClong, BFpack, biglasso, bnnSurvival, boot, Boruta, BrokenAdaptiveRidge, broom, broom.helpers, butcher, BuyseTest, CALIBERrfimpute, car, cBioPortalData, cequre, choplump, clinfun, cloneRate, confSAM, contsurvplot, copcor, coreSim, crosstable, CTNote, curatedBladderData, curatedCRCData, curatedOvarianData, DAAG, DanielBiostatistics10th, dawai, depigner, desctable, discSurv, dlnm, doBy, dressCheck, dtrackr, edecob, EmpiricalCalibration, EpiMix, exactRankTests, extremefit, fairml, fastAFT, FastKM, flexmix, fluoSurv, forestmodel, forplo, FRESA.CAD, fwb, gamair, gamboostLSS, gamlss.inf, gap, genefu, genSurv, GGally, ggeffects, ggformula, ggfortify, ggpolar, ggstats, ggstatsplot, glmglrt, glmSparseNet, glmulti, Greg, grf, grImport, grpreg, gtsummary, h2o, hal9001, HarmonizedTCGAData, heemod, highcharter, Hmisc, homomorpheR, HSAUR, HSAUR2, HSAUR3, icrf, injurytools, INLAjoint, insight, iNZightRegression, irboost, ISwR, kdry, kernhaz, kmc, kyotil, lavaSearch2, LDM, lmtest, lrstat, lss2, marginaleffects, marginalizedRisk, MASS, MatchIt, maxstat, mc2d, MCPModGeneral, mediation, metafor, mgcv, mi, mice, midasHLA, mitml, mlr3filters, mlsurvlrnrs, modelsummary, momentuHMM, MultiAssayExperiment, MuMIn, musicatk, ncvreg, netdiffuseR, nipalsMCIA, nlive, nncc, npsm, opera, optband, outreg, pander, parameters, parmsurvfit, parsnip, pder, pensim, performance, ph2bye, ph2mult, phyloregion, pillar, PINSPlus, PlackettLuce, pmartR, pmml, pmxpartab, PResiduals, psborrow2, purge, qwraps2, R2HTML, randomForestSRC, ranger, rattle, recodeflow, relevance, report, reporttools, RESI, ricu, rineq, RLT, rpart, rsimsum, rsmatch, rtables, RVAideMemoire, saemix, safe, sandwich, scFeatures, sharp, shinyPredict, simex, simstudy, simsurv, sirus, smof, smoothROCtime, sparseR, srvyr, SSLR, Statial, statsExpressions, subscreen, support.BWS, support.BWS2, support.BWS3, support.CEs, survivalmodels, SurvivalTests, tab, tableone, tbm, TCGAbiolinks, texmex, tfrmt, tidybulk, tidytidbits, timeROC, tramME, tramnet, tramvs, treeshap, trtf, truncreg, tuneRanger, UCSCXenaShiny, Umpire, utile.tables, utile.tools, utile.visuals, VirtualPop, visreg, wally, WeightIt, WinRatio, xtable, yardstick, zlog, ztable
Reverse enhances: denstrip, emmeans, papeR, prediction, qvcalc, stargazer, texreg

Linking:

Please use the canonical form https://CRAN.R-project.org/package=survival to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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