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Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data as originally described in Horvath and Zhang (2005) <doi:10.2202/1544-6115.1128> and Langfelder and Horvath (2008) <doi:10.1186/1471-2105-9-559>. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.
| Version: | 1.72-5 |
| Depends: | R (≥ 3.0), dynamicTreeCut (≥ 1.62), fastcluster |
| Imports: | stats, grDevices, utils, matrixStats (≥ 0.8.1), Hmisc, impute, splines, foreach, doParallel, preprocessCore, survival, parallel, GO.db, AnnotationDbi, Rcpp (≥ 0.11.0) |
| LinkingTo: | Rcpp |
| Suggests: | org.Hs.eg.db, org.Mm.eg.db, infotheo, entropy, minet |
| Published: | 2023-12-07 |
| Author: | Peter Langfelder and Steve Horvath with contributions by Chaochao Cai, Jun Dong, Jeremy Miller, Lin Song, Andy Yip, and Bin Zhang |
| Maintainer: | Peter Langfelder <Peter.Langfelder at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | http://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/ |
| NeedsCompilation: | yes |
| Citation: | WGCNA citation info |
| Materials: | ChangeLog |
| In views: | Omics |
| CRAN checks: | WGCNA results |
| Reference manual: | WGCNA.pdf |
| Package source: | WGCNA_1.72-5.tar.gz |
| Windows binaries: | r-devel: WGCNA_1.72-5.zip, r-release: WGCNA_1.72-5.zip, r-oldrel: WGCNA_1.72-5.zip |
| macOS binaries: | r-release (arm64): WGCNA_1.72-5.tgz, r-oldrel (arm64): WGCNA_1.72-5.tgz, r-release (x86_64): WGCNA_1.72-5.tgz, r-oldrel (x86_64): WGCNA_1.72-5.tgz |
| Old sources: | WGCNA archive |
| Reverse depends: | diffcoexp, NetSAM |
| Reverse imports: | BioNAR, BioNERO, CEMiTool, csdR, DiPALM, DrDimont, eclust, fastLiquidAssociation, FREEtree, GmicR, GWENA, iNETgrate, Macarron, MCbiclust, miRSM, MODA, MRPC, multiWGCNA, netboost, Patterns, Pigengene, RegEnrich, scpoisson, seq2pathway, SPsimSeq, TIN, TOmicsVis |
| Reverse suggests: | ADAPTS, BioCor, cola, DDPNA, fuzzyforest, GRaNIE, gsean, HiContacts, maGUI, scde, scGPS, scITD, spatialHeatmap, TRexSelector |
| Reverse enhances: | dendextend |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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