Last updated on 2026-03-10 21:54:10 CET.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| ATR | 14 | |||
| basefun | 1 | 13 | ||
| coin | 14 | |||
| exactRankTests | 1 | 2 | 11 | |
| HSAUR | 14 | |||
| HSAUR2 | 14 | |||
| HSAUR3 | 14 | |||
| inum | 14 | |||
| ipred | 14 | |||
| libcoin | 1 | 1 | 12 | |
| maxstat | 14 | |||
| mboost | 14 | |||
| mlt | 1 | 13 | ||
| mlt.docreg | 2 | 12 | ||
| modeltools | 14 | |||
| multcomp | 14 | |||
| MVA | 14 | |||
| mvtnorm | 14 | |||
| party | 14 | |||
| partykit | 1 | 2 | 11 | |
| tbm | 2 | 12 | ||
| TH.data | 3 | 11 | ||
| tram | 2 | 1 | 11 | |
| trtf | 14 | |||
| variables | 14 |
Current CRAN status: OK: 14
Current CRAN status: WARN: 1, OK: 13
Version: 1.2-6
Check: Rd files
Result: WARN
prepare_Rd: ./man/Bernstein_basis.Rd:35: unknown macro '\bibcitet'
checkRd: (-1) Bernstein_basis.Rd:35: Lost braces
35 | methods for polynomials in Bernstein form, see \bibcitet{basefun::Farouki_2012}.
| ^
prepare_Rd: ./man/Legendre_basis.Rd:22: unknown macro '\bibcitet'
checkRd: (-1) Legendre_basis.Rd:22: Lost braces
22 | methods for Legendre polynomials, see \bibcitet{basefun::Farouki_2012}.
| ^
prepare_Rd: ./man/basefun-package.Rd:12: unknown macro '\bibcitep'
checkRd: (-1) basefun-package.Rd:12: Lost braces
12 | package \bibcitep{basefun::Hothorn:2018}
| ^
prepare_Rd: ./man/cyclic_basis.Rd:19: unknown macro '\bibcitet'
checkRd: (-1) cyclic_basis.Rd:19: Lost braces
19 | modelling seasonal effects, see \bibcitet{basefun::Held_Paul_2012}, Section 2.2.
| ^
prepare_Rd: ./man/predict.Rd:32: unknown macro '\bibcitep'
checkRd: (-1) predict.Rd:32: Lost braces
32 | \bibcitep{basefun::Currie_Durban_Eilers_2006} to compute the corresponding predictions efficiently.
| ^
Flavor: r-release-linux-x86_64
Current CRAN status: OK: 14
Current CRAN status: ERROR: 1, NOTE: 2, OK: 11
Version: 0.8-35
Check: tests
Result: ERROR
Running ‘bugfix-tests.R’ [0s/1s]
Comparing ‘bugfix-tests.Rout’ to ‘bugfix-tests.Rout.save’ ... OK
Running ‘dtest.R’ [1s/2s]
Running ‘reg-tests.R’ [0s/1s]
Running ‘stest.R’ [2s/3s]
Running the tests in ‘tests/reg-tests.R’ failed.
Complete output:
>
> require("exactRankTests")
Loading required package: exactRankTests
Package 'exactRankTests' is no longer under development.
Please consider using package 'coin' instead.
> suppressWarnings(RNGversion("3.5.3"))
> set.seed(29081975)
>
> #
> # Regression tests
> #
>
> # Blood Pressure data: Results from StatXact 5 (demo version)
>
> data(bloodp)
> # bloodp$group <- factor(c(rep("Behandlung", 4), rep("Kontrolle", 11)))
>
> we <- wilcox.exact(bp ~ group, data=bloodp, conf.int=TRUE)
> we
Exact Wilcoxon rank sum test
data: bp by group
W = 35, p-value = 0.0989
alternative hypothesis: true mu is not equal to 0
95 percent confidence interval:
-4 22
sample estimates:
difference in location
9.5
> stopifnot(round(we$p.value,4) == 0.0989)
> stopifnot(we$conf.int[1] == -4)
> stopifnot(we$conf.int[2] == 22)
> stopifnot(we$conf.estimate == 9.5)
>
> we <- wilcox.exact(bp ~ group, data=bloodp, conf.int=TRUE, exact=FALSE)
> we
Asymptotic Wilcoxon rank sum test
data: bp by group
W = 35, p-value = 0.08535
alternative hypothesis: true mu is not equal to 0
95 percent confidence interval:
-4.143776e-05 2.000007e+01
sample estimates:
difference in location
9.790799
> stopifnot(round(we$p.value,4) == 0.0853)
>
> we <- wilcox.exact(bp ~ group, data=bloodp, alternative="greater", conf.int=TRUE)
> stopifnot(round(we$p.value,4) == 0.0542)
>
>
> pt <- perm.test(bp ~ group, data=bloodp)
> pt
2-sample Permutation Test
data: bp by group
T = 402, p-value = 0.104
alternative hypothesis: true mu is not equal to 0
> stopifnot(round(pt$p.value, 4) == 0.1040)
>
> pt <- perm.test(bp ~ group, data=bloodp, alternative="greater")
> pt
2-sample Permutation Test
data: bp by group
T = 402, p-value = 0.05641
alternative hypothesis: true mu is greater than 0
> stopifnot(round(pt$p.value, 4) == 0.0564)
>
> pt <- perm.test(bp ~ group, data=bloodp, exact=FALSE)
> pt
Asymptotic 2-sample Permutation Test
data: bp by group
T = 402, p-value = 0.107
alternative hypothesis: true mu is not equal to 0
> stopifnot(round(pt$p.value, 4) == 0.1070)
>
> sc <- cscores(bloodp$bp, type="NormalQuantile")
> X <- sum(sc[bloodp$group == "group2"])
> stopifnot(round(pperm(X, sc, 11), 4) == 0.0462)
> stopifnot(round(pperm(X, sc, 11, alternative="two.sided"), 4) == 0.0799)
>
> # use scores mapped into integers
>
> sc <- cscores(bloodp$bp, type="NormalQuantile", int=TRUE)
> X <- sum(sc[bloodp$group == "group2"])
> stopifnot(round(pperm(X, sc, 11), 4) == 0.0462)
> stopifnot(round(pperm(X, sc, 11, alternative="two.sided"), 4) == 0.0799)
>
> # Equality of wilcox.test in package ctest and wilcox.exact
>
> x <- c(1.83, 0.50, 1.62, 2.48, 1.68, 1.88, 1.55, 3.06, 1.30)
> y <- c(0.878, 0.647, 0.598, 2.05, 1.06, 1.29, 1.06, 3.14, 1.29)
>
> wt <- wilcox.test(y-x)
> we <- wilcox.exact(y -x)
> wt
Wilcoxon signed rank exact test
data: y - x
V = 5, p-value = 0.03906
alternative hypothesis: true location is not equal to 0
> we
Exact Wilcoxon signed rank test
data: y - x
V = 5, p-value = 0.03906
alternative hypothesis: true mu is not equal to 0
> stopifnot(wt$p.value == we$p.value)
>
> x <- c(0.80, 0.83, 1.89, 1.04, 1.45, 1.38, 1.91, 1.64, 0.73, 1.46)
> y <- c(1.15, 0.88, 0.90, 0.74, 1.21)
> we <- wilcox.exact(x, y, alternative = "g") # greater
> wt <- wilcox.test(x, y, alternative = "g")
> stopifnot(we$p.value == wt$p.value)
> stopifnot(all(we$conf.int == wt$conf.int))
>
> x <- rnorm(10)
> y <- rnorm(10, 2)
> wilcox.exact(x, y, conf.int = TRUE)
Exact Wilcoxon rank sum test
data: x and y
W = 13, p-value = 0.003886
alternative hypothesis: true mu is not equal to 0
95 percent confidence interval:
-2.6984506 -0.5996612
sample estimates:
difference in location
-2.07512
>
> if (!any(duplicated(c(x,y)))) {
+ we <- wilcox.exact(x, y, conf.int = TRUE)
+ print(we)
+ wt <- wilcox.test(x, y, conf.int = TRUE)
+ print(wt)
+ we$pointprob <- NULL
+ we$method <- NULL
+ we$null.value <- NULL
+ wt$parameter <- NULL
+ wt$method <- NULL
+ wt$null.value <- NULL
+ stopifnot(all.equal(wt, we))
+ we <- wilcox.exact(x, conf.int = TRUE)
+ print(we)
+ wt <- wilcox.test(x, conf.int = TRUE)
+ print(wt)
+ we$pointprob <- NULL
+ we$method <- NULL
+ we$null.value <- NULL
+ wt$parameter <- NULL
+ wt$method <- NULL
+ wt$null.value <- NULL
+ stopifnot(all.equal(wt, we))
+ }
Exact Wilcoxon rank sum test
data: x and y
W = 13, p-value = 0.003886
alternative hypothesis: true mu is not equal to 0
95 percent confidence interval:
-2.6984506 -0.5996612
sample estimates:
difference in location
-2.07512
Wilcoxon rank sum exact test
data: x and y
W = 13, p-value = 0.003886
alternative hypothesis: true location shift is not equal to 0
95.67429 percent confidence interval:
-2.6984506 -0.5996612
sample estimates:
difference in location
-2.07512
Error: wt and we are not equal:
Component "conf.int": Attributes: < Component "conf.level": Mean relative difference: 0.007047815 >
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.8-36
Check: tests
Result: NOTE
Running ‘bugfix-tests.R’ [0s/0s]
Comparing ‘bugfix-tests.Rout’ to ‘bugfix-tests.Rout.save’ ... OK
Running ‘dtest.R’ [0s/0s]
Running ‘reg-tests.R’ [0s/0s]
Comparing ‘reg-tests.Rout’ to ‘reg-tests.Rout.save’ ...
194c194
< 95 percent confidence interval:
---
> 95.67429 percent confidence interval:
218c218
< 95 percent confidence interval:
---
> 95.11719 percent confidence interval:
Running ‘stest.R’ [1s/1s]
Flavor: r-devel-macos-arm64
Version: 0.8-36
Check: tests
Result: NOTE
Running ‘bugfix-tests.R’ [0s/0s]
Comparing ‘bugfix-tests.Rout’ to ‘bugfix-tests.Rout.save’ ... OK
Running ‘dtest.R’ [0s/0s]
Running ‘reg-tests.R’ [0s/0s]
Comparing ‘reg-tests.Rout’ to ‘reg-tests.Rout.save’ ...194c194
< 95 percent confidence interval:
---
> 95.67429 percent confidence interval:
218c218
< 95 percent confidence interval:
---
> 95.11719 percent confidence interval:
Running ‘stest.R’ [1s/1s]
Flavor: r-release-macos-arm64
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: ERROR: 1, WARN: 1, OK: 12
Version: 1.0-11
Check: Rd files
Result: WARN
prepare_Rd: ./man/LinStatExpCov.Rd:40: unknown macro '\bibcitet'
prepare_Rd: ./man/LinStatExpCov.Rd:41: unknown macro '\bibcitet'
prepare_Rd: ./man/LinStatExpCov.Rd:42: unknown macro '\bibcitet'
checkRd: (-1) LinStatExpCov.Rd:40: Lost braces
40 | \bibcitet{libcoin::strasserweber1999}, see also
| ^
checkRd: (-1) LinStatExpCov.Rd:41: Lost braces
41 | \bibcitet{libcoin::Hothorn+Hornik+Wiel+Zeileis:2006} and
| ^
checkRd: (-1) LinStatExpCov.Rd:42: Lost braces
42 | \bibcitet{libcoin::Hothorn+Hornik+VanDeWiel:2008}.
| ^
Flavor: r-release-linux-x86_64
Version: 1.0-11
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘libcoin.Rnw’ using Sweave
Error: processing vignette 'libcoin.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'libcoin.tex' failed.
BibTeX errors:
The top-level auxiliary file: libcoin.aux
The style file: plainnat.bst
White space in argument---line 395 of file libcoin.aux
: \bibdata{/Volumes/Builds/packages/big-sur-x86\unhbox
: \voidb@x \protect \penalty \@M \hskip \z@skip \T1\textunderscore \protect \discretionary {\char \hyphenchar \font }{}{}\protect \penalty \@M \hskip \z@skip 64/results/4.4/libcoin.Rcheck/libcoin/REFERENCES}
I'm skipping whatever remains of this command
I found no database files---while reading file libcoin.aux
--- failed re-building ‘libcoin.Rnw’
SUMMARY: processing the following file failed:
‘libcoin.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: WARN: 1, OK: 13
Version: 1.7-4
Check: Rd files
Result: WARN
prepare_Rd: ./man/R.Rd:76: unknown macro '\bibcitep'
checkRd: (-1) R.Rd:76: Lost braces
76 | More examples can be found in \bibcitep{mlt::Hothorn:2018} and in
| ^
prepare_Rd: ./man/ctm.Rd:37: unknown macro '\bibcitet'
prepare_Rd: ./man/ctm.Rd:49: unknown macro '\bibcitep'
checkRd: (-1) ctm.Rd:37: Lost braces
37 | is estimated). \bibcitet{mlt::Hothorn:Moest:Buehlmann:2017} explain the model class.
| ^
checkRd: (-1) ctm.Rd:49: Lost braces
49 | Shift-scale models \bibcitep{mlt::Siegfried_Kook_Hothorn_2023} of the form
| ^
prepare_Rd: ./man/mlt-package.Rd:7: unknown macro '\bibcitet'
prepare_Rd: ./man/mlt-package.Rd:8: unknown macro '\bibcitet'
prepare_Rd: ./man/mlt-package.Rd:9: unknown macro '\bibcitet'
prepare_Rd: ./man/mlt-package.Rd:12: unknown macro '\bibcitep'
checkRd: (-1) mlt-package.Rd:7: Lost braces
7 | conditional transformation models as introduced by \bibcitet{mlt::Hothorn:Moest:Buehlmann:2017},
| ^
checkRd: (-1) mlt-package.Rd:8: Lost braces
8 | its multivariate extension by \bibcitet{mlt::Klein:Hothorn:Barbanti:2020}, and
| ^
checkRd: (-1) mlt-package.Rd:9: Lost braces
9 | location-scale models by \bibcitet{Siegfried_Kook_Hothorn_2023}.
| ^
checkRd: (-1) mlt-package.Rd:12: Lost braces
12 | vignette from package \code{mlt.docreg} \bibcitep{mlt::Hothorn:2018}.
| ^
prepare_Rd: ./man/mlt.Rd:40: unknown macro '\bibcitet'
prepare_Rd: ./man/mlt.Rd:41: unknown macro '\bibcitep'
prepare_Rd: ./man/mlt.Rd:42: unknown macro '\bibcitep'
checkRd: (-1) mlt.Rd:40: Lost braces
40 | \bibcitet{mlt::Hothorn:Moest:Buehlmann:2017}, including location-scale models
| ^
checkRd: (-1) mlt.Rd:41: Lost braces
41 | \bibcitep{Siegfried_Kook_Hothorn_2023}. Implementation details are given
| ^
checkRd: (-1) mlt.Rd:42: Lost braces
42 | in \bibcitep{mlt::Hothorn:2018}.
| ^
prepare_Rd: ./man/mmlt.Rd:92: unknown macro '\bibcitet'
checkRd: (-1) mmlt.Rd:92: Lost braces
92 | as described by \bibcitet{mlt::Klein:Hothorn:Barbanti:2020}.
| ^
prepare_Rd: ./man/predict.Rd:97: unknown macro '\bibcitep'
checkRd: (-1) predict.Rd:97: Lost braces
97 | More examples can be found in \bibcitep{mlt::Hothorn:2018}.
| ^
Flavor: r-release-linux-x86_64
Current CRAN status: WARN: 2, OK: 12
Version: 1.1-12
Check: tests
Result: NOTE
Running ‘AFT-Ex.R’ [1s/1s]
Comparing ‘AFT-Ex.Rout’ to ‘AFT-Ex.Rout.save’ ...179c179
< 1.0000 -0.3657 0.6942 1.1191
---
> 1.0000 -0.3657 0.6942 1.1192
Running ‘GBSG2.R’ [1s/1s]
Running ‘KM-Ex.R’ [1s/1s]
Comparing ‘KM-Ex.Rout’ to ‘KM-Ex.Rout.save’ ... OK
Running ‘faithful.R’ [1s/1s]
Comparing ‘faithful.Rout’ to ‘faithful.Rout.save’ ... OK
Running ‘orm-Ex.R’ [8s/5s]
Comparing ‘orm-Ex.Rout’ to ‘orm-Ex.Rout.save’ ... OK
Running ‘timedep_covar.R’ [1s/1s]
Comparing ‘timedep_covar.Rout’ to ‘timedep_covar.Rout.save’ ... OK
Running ‘truncreg-Ex.R’ [1s/1s]
Comparing ‘truncreg-Ex.Rout’ to ‘truncreg-Ex.Rout.save’ ... OK
Flavor: r-release-macos-arm64
Version: 1.1-12
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘mlt.Rnw’ using knitr
trying URL 'https://zenodo.org/record/17179/files/DVC.tgz'
Content type 'application/octet-stream' length 2292581 bytes (2.2 MB)
==================================================
downloaded 2.2 MB
2025-12-09 06:37:02.773 R[94880:726293] XType: Using static font registry.
Error: processing vignette 'mlt.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'mlt.tex' failed.
LaTeX errors:
! LaTeX Error: File `accents.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.28 \usepackage
{rotating}^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘mlt.Rnw’
SUMMARY: processing the following file failed:
‘mlt.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64
Version: 1.1-12
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘mlt.Rnw’ using knitr
trying URL 'https://zenodo.org/record/17179/files/DVC.tgz'
Content type 'application/octet-stream' length 2292581 bytes (2.2 MB)
==================================================
downloaded 2.2 MB
2025-12-09 06:27:49.496 R[27606:333961] XType: Using static font registry.
Error: processing vignette 'mlt.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'mlt.tex' failed.
LaTeX errors:
! LaTeX Error: File `accents.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.28 \usepackage
{rotating}^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘mlt.Rnw’
SUMMARY: processing the following file failed:
‘mlt.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: OK: 14
Current CRAN status: WARN: 1, NOTE: 2, OK: 11
Version: 1.2-26
Check: tests
Result: NOTE
Running ‘bugfixes.R’ [1s/1s]
Comparing ‘bugfixes.Rout’ to ‘bugfixes.Rout.save’ ...
1143c1143
< criterion -0.0004771838 -0.0004771838
---
> criterion -0.0001771838 -0.0001771838
Running ‘constparty.R’ [1s/1s]
Comparing ‘constparty.Rout’ to ‘constparty.Rout.save’ ... OK
Running ‘regtest-MIA.R’ [0s/0s]
Comparing ‘regtest-MIA.Rout’ to ‘regtest-MIA.Rout.save’ ... OK
Running ‘regtest-cforest.R’ [2s/2s]
Comparing ‘regtest-cforest.Rout’ to ‘regtest-cforest.Rout.save’ ... OK
Running ‘regtest-ctree.R’ [0s/0s]
Comparing ‘regtest-ctree.Rout’ to ‘regtest-ctree.Rout.save’ ... OK
Running ‘regtest-glmtree.R’ [9s/9s]
Comparing ‘regtest-glmtree.Rout’ to ‘regtest-glmtree.Rout.save’ ... OK
Running ‘regtest-honesty.R’ [0s/0s]
Running ‘regtest-lmtree.R’ [1s/1s]
Running ‘regtest-nmax.R’ [0s/0s]
Comparing ‘regtest-nmax.Rout’ to ‘regtest-nmax.Rout.save’ ... OK
Running ‘regtest-node.R’ [0s/0s]
Comparing ‘regtest-node.Rout’ to ‘regtest-node.Rout.save’ ... OK
Running ‘regtest-party-random.R’ [1s/1s]
Running ‘regtest-party.R’ [1s/1s]
Comparing ‘regtest-party.Rout’ to ‘regtest-party.Rout.save’ ... OK
Running ‘regtest-split.R’ [0s/0s]
Comparing ‘regtest-split.Rout’ to ‘regtest-split.Rout.save’ ... OK
Running ‘regtest-weights.R’ [0s/1s]
Comparing ‘regtest-weights.Rout’ to ‘regtest-weights.Rout.save’ ... OK
Flavor: r-devel-macos-arm64
Version: 1.2-26
Check: Rd files
Result: WARN
prepare_Rd: ./man/HuntingSpiders.Rd:39: unknown macro '\bibcitet'
prepare_Rd: ./man/HuntingSpiders.Rd:40: unknown macro '\bibcitet'
checkRd: (-1) HuntingSpiders.Rd:39: Lost braces
39 | The data were originally analyzed by \bibcitet{partykit::VanDerAart+SmeenkEnserink:1975}.
| ^
checkRd: (-1) HuntingSpiders.Rd:40: Lost braces
40 | \bibcitet{partykit::Death:2002} transformed all variables to the 0--9 scale and employed
| ^
prepare_Rd: ./man/WeatherPlay.Rd:25: unknown macro '\bibcitet'
checkRd: (-1) WeatherPlay.Rd:25: Lost braces
25 | Table 1.3 in \bibcitet{partykit::Witten+Frank:2011}.
| ^
prepare_Rd: ./man/cforest.Rd:85: unknown macro '\bibcitet'
prepare_Rd: ./man/cforest.Rd:163: unknown macro '\bibcitet'
prepare_Rd: ./man/cforest.Rd:164: unknown macro '\bibcitet'
prepare_Rd: ./man/cforest.Rd:175: unknown macro '\bibcitet'
prepare_Rd: ./man/cforest.Rd:176: unknown macro '\bibcitet'
prepare_Rd: ./man/cforest.Rd:194: unknown macro '\bibcitet'
prepare_Rd: ./man/cforest.Rd:195: unknown macro '\bibcitet'
prepare_Rd: ./man/cforest.Rd:196: unknown macro '\bibcitet'
checkRd: (-1) cforest.Rd:85: Lost braces
85 | \bibcitet{partykit::Wager_Athey_2018}.}
| ^
checkRd: (-1) cforest.Rd:163: Lost braces
163 | See \bibcitet{partykit::Hothorn+Lausen+Benner:2004} and
| ^
checkRd: (-1) cforest.Rd:164: Lost braces
164 | \bibcitet{partykit::Meinshausen_2006} for a description.
| ^
checkRd: (-1) cforest.Rd:175: Lost braces
175 | \bibcitet{partykit::Hothorn+Lausen+Benner:2004} and
| ^
checkRd: (-1) cforest.Rd:176: Lost braces
176 | \bibcitet{partykit::Hothorn+Buehlmann+Dudoit:2006}, or to
| ^
checkRd: (-1) cforest.Rd:194: Lost braces
194 | are used by default. See \bibcitet{partykit::Hothorn+Hornik+Zeileis:2006} and
| ^
checkRd: (-1) cforest.Rd:195: Lost braces
195 | \bibcitet{partykit::Strobl+Boulesteix+Zeileis:2006}
| ^
checkRd: (-1) cforest.Rd:196: Lost braces
196 | as well as \bibcitet{partykit::Strobl+Malley+Tutz:2009}.
| ^
prepare_Rd: ./man/ctree.Rd:68: unknown macro '\bibcitet'
prepare_Rd: ./man/ctree.Rd:82: unknown macro '\bibcitet'
prepare_Rd: ./man/ctree.Rd:105: unknown macro '\bibcitet'
prepare_Rd: ./man/ctree.Rd:106: unknown macro '\bibcitet'
prepare_Rd: ./man/ctree.Rd:107: unknown macro '\bibcitet'
checkRd: (-1) ctree.Rd:68: Lost braces
68 | or permutation tests, developed by \bibcitet{partykit::Strasser+Weber:1999}. The stop
| ^
checkRd: (-1) ctree.Rd:82: Lost braces
82 | \bibcitet{partykit::Hothorn+Hornik+Zeileis:2006}.
| ^
checkRd: (-1) ctree.Rd:105: Lost braces
105 | \bibcitet{partykit::Hothorn+Hornik+Zeileis:2006} and
| ^
checkRd: (-1) ctree.Rd:106: Lost braces
106 | \bibcitet{partykit::Hothorn+Hornik+Wiel+Zeileis:2006}. The implementation is
| ^
checkRd: (-1) ctree.Rd:107: Lost braces
107 | described in \bibcitet{partykit::Hothorn_Zeileis_2015}.
| ^
prepare_Rd: ./man/ctree_control.Rd:66: unknown macro '\bibcitet'
prepare_Rd: ./man/ctree_control.Rd:86: unknown macro '\bibcitet'
checkRd: (-1) ctree_control.Rd:66: Lost braces
66 | see \bibcitet{partykit::Twala+Jones+Hand:2008}.}
| ^
checkRd: (-1) ctree_control.Rd:86: Lost braces
86 | \bibcitet{partykit::Galili+Meilijson:2016}.}
| ^
prepare_Rd: ./man/glmtree.Rd:59: unknown macro '\bibcitet'
checkRd: (-1) glmtree.Rd:59: Lost braces
59 | The methodology is described in \bibcitet{partykit::Zeileis+Hothorn+Hornik:2008}.
| ^
prepare_Rd: ./man/lmtree.Rd:56: unknown macro '\bibcitet'
checkRd: (-1) lmtree.Rd:56: Lost braces
56 | The methodology is described in \bibcitet{partykit::Zeileis+Hothorn+Hornik:2008}.
| ^
prepare_Rd: ./man/mob.Rd:84: unknown macro '\bibcitet'
prepare_Rd: ./man/mob.Rd:123: unknown macro '\bibcitet'
checkRd: (-1) mob.Rd:84: Lost braces
84 | \bibcitet{partykit::Zeileis+Hothorn+Hornik:2008} and some illustrations are provided in
| ^
checkRd: (-1) mob.Rd:123: Lost braces
123 | by \bibcitet{partykit::Hothorn_Zeileis_2015}.
| ^
prepare_Rd: ./man/panelfunctions.Rd:131: unknown macro '\bibcitep'
checkRd: (-1) panelfunctions.Rd:131: Lost braces
131 | \bibcitep{partykit::Meyer+Zeileis+Hornik:2006}
| ^
prepare_Rd: ./man/party-plot.Rd:85: unknown macro '\bibcitet'
checkRd: (-1) party-plot.Rd:85: Lost braces
85 | \bibcitet{partykit::Meyer+Zeileis+Hornik:2006}.
| ^
prepare_Rd: ./man/party.Rd:80: unknown macro '\bibcitet'
checkRd: (-1) party.Rd:80: Lost braces
80 | An introduction is available from \bibcitet{partykit::Hothorn_Zeileis_2015}.
| ^
prepare_Rd: ./man/partynode.Rd:97: unknown macro '\bibcitet'
checkRd: (-1) partynode.Rd:97: Lost braces
97 | An introduction is available from \bibcitet{partykit::Hothorn_Zeileis_2015}.
| ^
prepare_Rd: ./man/partysplit.Rd:100: unknown macro '\bibcitet'
checkRd: (-1) partysplit.Rd:100: Lost braces
100 | An introduction is available from \bibcitet{partykit::Hothorn_Zeileis_2015}.
| ^
prepare_Rd: ./man/varimp.Rd:62: unknown macro '\bibcitet'
prepare_Rd: ./man/varimp.Rd:70: unknown macro '\bibcitet'
checkRd: (-1) varimp.Rd:62: Lost braces
62 | See \bibcitet{partykit::Strobl+Boulesteix+Kneib:2008} for details.
| ^
checkRd: (-1) varimp.Rd:70: Lost braces
70 | described in \bibcitet{partykit::Hapfelmeier_Hothorn_Ulm_Strobl_2014} is performed.
| ^
Flavor: r-release-linux-x86_64
Version: 1.2-26
Check: tests
Result: NOTE
Running ‘bugfixes.R’ [1s/1s]
Comparing ‘bugfixes.Rout’ to ‘bugfixes.Rout.save’ ...1143c1143
< criterion -0.0004771838 -0.0004771838
---
> criterion -0.0001771838 -0.0001771838
Running ‘constparty.R’ [1s/1s]
Comparing ‘constparty.Rout’ to ‘constparty.Rout.save’ ... OK
Running ‘regtest-MIA.R’ [0s/1s]
Comparing ‘regtest-MIA.Rout’ to ‘regtest-MIA.Rout.save’ ... OK
Running ‘regtest-cforest.R’ [2s/2s]
Comparing ‘regtest-cforest.Rout’ to ‘regtest-cforest.Rout.save’ ... OK
Running ‘regtest-ctree.R’ [0s/0s]
Comparing ‘regtest-ctree.Rout’ to ‘regtest-ctree.Rout.save’ ... OK
Running ‘regtest-glmtree.R’ [9s/9s]
Comparing ‘regtest-glmtree.Rout’ to ‘regtest-glmtree.Rout.save’ ... OK
Running ‘regtest-honesty.R’ [0s/0s]
Running ‘regtest-lmtree.R’ [1s/1s]
Running ‘regtest-nmax.R’ [0s/0s]
Comparing ‘regtest-nmax.Rout’ to ‘regtest-nmax.Rout.save’ ... OK
Running ‘regtest-node.R’ [0s/0s]
Comparing ‘regtest-node.Rout’ to ‘regtest-node.Rout.save’ ... OK
Running ‘regtest-party-random.R’ [1s/1s]
Running ‘regtest-party.R’ [1s/1s]
Comparing ‘regtest-party.Rout’ to ‘regtest-party.Rout.save’ ... OK
Running ‘regtest-split.R’ [0s/0s]
Comparing ‘regtest-split.Rout’ to ‘regtest-split.Rout.save’ ... OK
Running ‘regtest-weights.R’ [0s/0s]
Comparing ‘regtest-weights.Rout’ to ‘regtest-weights.Rout.save’ ... OK
Flavor: r-release-macos-arm64
Current CRAN status: WARN: 2, OK: 12
Version: 0.3-10
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘tbm_supplement.Rnw’ using knitr
warning: solve(): system is singular (rcond: 3.43764e-20); attempting approx solution
warning: solve(): system is singular (rcond: 3.43764e-20); attempting approx solution
warning: solve(): system is singular (rcond: 3.43764e-20); attempting approx solution
warning: solve(): system is singular (rcond: 3.43764e-20); attempting approx solution
warning: solve(): system is singular (rcond: 3.43764e-20); attempting approx solution
warning: solve(): system is singular (rcond: 3.43764e-20); attempting approx solution
warning: solve(): system is singular (rcond: 3.43764e-20); attempting approx solution
warning: solve(): system is singular (rcond: 3.43764e-20); attempting approx solution
warning: solve(): system is singular (rcond: 3.43764e-20); attempting approx solution
warning: solve(): system is singular (rcond: 3.43764e-20); attempting approx solution
2025-12-02 22:49:48.534 R[68727:523714] XType: Using static font registry.
warning: solve(): system is singular (rcond: 4.23371e-22); attempting approx solution
warning: solve(): system is singular (rcond: 4.23371e-22); attempting approx solution
warning: solve(): system is singular (rcond: 4.23371e-22); attempting approx solution
warning: solve(): system is singular (rcond: 4.23371e-22); attempting approx solution
warning: solve(): system is singular (rcond: 4.23371e-22); attempting approx solution
warning: solve(): system is singular (rcond: 1.2944e-18); attempting approx solution
warning: solve(): system is singular (rcond: 1.2944e-18); attempting approx solution
warning: solve(): system is singular (rcond: 1.2944e-18); attempting approx solution
warning: solve(): system is singular (rcond: 1.2944e-18); attempting approx solution
warning: solve(): system is singular (rcond: 1.2944e-18); attempting approx solution
Error: processing vignette 'tbm_supplement.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'tbm_supplement.tex' failed.
LaTeX errors:
! LaTeX Error: File `accents.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.28 \usepackage
{xcolor}^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘tbm_supplement.Rnw’
SUMMARY: processing the following file failed:
‘tbm_supplement.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64
Version: 0.3-10
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘tbm_supplement.Rnw’ using knitr
warning: solve(): system is singular (rcond: 6.12788e-20); attempting approx solution
warning: solve(): system is singular (rcond: 6.12788e-20); attempting approx solution
warning: solve(): system is singular (rcond: 6.12788e-20); attempting approx solution
warning: solve(): system is singular (rcond: 6.12788e-20); attempting approx solution
warning: solve(): system is singular (rcond: 6.12788e-20); attempting approx solution
warning: solve(): system is singular (rcond: 6.12788e-20); attempting approx solution
warning: solve(): system is singular (rcond: 6.12788e-20); attempting approx solution
warning: solve(): system is singular (rcond: 6.12788e-20); attempting approx solution
warning: solve(): system is singular (rcond: 6.12788e-20); attempting approx solution
warning: solve(): system is singular (rcond: 6.12788e-20); attempting approx solution
2025-12-02 23:14:38.843 R[45890:207220] XType: Using static font registry.
warning: solve(): system is singular (rcond: 3.08648e-22); attempting approx solution
warning: solve(): system is singular (rcond: 3.08648e-22); attempting approx solution
warning: solve(): system is singular (rcond: 3.08648e-22); attempting approx solution
warning: solve(): system is singular (rcond: 3.08648e-22); attempting approx solution
warning: solve(): system is singular (rcond: 3.08648e-22); attempting approx solution
warning: solve(): system is singular (rcond: 1.09606e-18); attempting approx solution
warning: solve(): system is singular (rcond: 1.09606e-18); attempting approx solution
warning: solve(): system is singular (rcond: 1.09606e-18); attempting approx solution
warning: solve(): system is singular (rcond: 1.09606e-18); attempting approx solution
warning: solve(): system is singular (rcond: 1.09606e-18); attempting approx solution
Error: processing vignette 'tbm_supplement.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'tbm_supplement.tex' failed.
LaTeX errors:
! LaTeX Error: File `accents.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.28 \usepackage
{xcolor}^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘tbm_supplement.Rnw’
SUMMARY: processing the following file failed:
‘tbm_supplement.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64
Current CRAN status: NOTE: 3, OK: 11
Version: 1.1-5
Check: installed package size
Result: NOTE
installed size is 8.9Mb
sub-directories of 1Mb or more:
data 1.1Mb
rda 7.1Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 2, NOTE: 1, OK: 11
Version: 1.4-1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘NAMI.Rnw’ using knitr
--- finished re-building ‘NAMI.Rnw’
--- re-building ‘mtram.Rnw’ using knitr
--- finished re-building ‘mtram.Rnw’
+-+mtram.pdf
*** caught segfault ***
address 0x2070, cause 'memory not mapped'
An irrecoverable exception occurred. R is aborting now ...
--- re-building ‘survtram.Rnw’ using knitr
Warning in doTryCatch(return(expr), name, parentenv, handler) :
semi-transparency is not supported on this device: reported only once per page
Warning in doTryCatch(return(expr), name, parentenv, handler) :
semi-transparency is not supported on this device: reported only once per page
Warning in doTryCatch(return(expr), name, parentenv, handler) :
semi-transparency is not supported on this device: reported only once per page
--- finished re-building ‘survtram.Rnw’
--- re-building ‘tram.Rnw’ using knitr
--- finished re-building ‘tram.Rnw’
SUMMARY: processing the following file failed:
‘mtram.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.4-0
Check: Rd files
Result: WARN
prepare_Rd: ./man/Aareg.Rd:55: unknown macro '\bibcitet'
prepare_Rd: ./man/Aareg.Rd:56: unknown macro '\bibcitet'
checkRd: (-1) Aareg.Rd:55: Lost braces
55 | can be found in \bibcitet{tram::Hothorn:Moest:Buehlmann:2017} and
| ^
checkRd: (-1) Aareg.Rd:56: Lost braces
56 | \bibcitet{tram::Hothorn:2018}.
| ^
prepare_Rd: ./man/BoxCox.Rd:46: unknown macro '\bibcitep'
prepare_Rd: ./man/BoxCox.Rd:54: unknown macro '\bibcitet'
prepare_Rd: ./man/BoxCox.Rd:55: unknown macro '\bibcitet'
checkRd: (-1) BoxCox.Rd:46: Lost braces
46 | This is similar to a Box-Cox transformation \bibcitep{tram::BoxCox:1964}, but the technical details
| ^
checkRd: (-1) BoxCox.Rd:54: Lost braces
54 | can be found in \bibcitet{tram::Hothorn:Moest:Buehlmann:2017} and
| ^
checkRd: (-1) BoxCox.Rd:55: Lost braces
55 | \bibcitet{tram::Hothorn:2018}.
| ^
prepare_Rd: ./man/Colr.Rd:58: unknown macro '\bibcitet'
prepare_Rd: ./man/Colr.Rd:59: unknown macro '\bibcitet'
checkRd: (-1) Colr.Rd:58: Lost braces
58 | \bibcitet{tram::Lohse:Rohrmann:Faeh:2017} and
| ^
checkRd: (-1) Colr.Rd:59: Lost braces
59 | \bibcitet{tram::Hothorn:Moest:Buehlmann:2017}.
| ^
prepare_Rd: ./man/Compris.Rd:77: unknown macro '\bibcitet'
prepare_Rd: ./man/Compris.Rd:78: unknown macro '\bibcitet'
prepare_Rd: ./man/Compris.Rd:79: unknown macro '\bibcitet'
checkRd: (-1) Compris.Rd:77: Lost braces
77 | regression framework described by \bibcitet{tram::Czado:Keilegom:2022} and
| ^
checkRd: (-1) Compris.Rd:78: Lost braces
78 | \bibcitet{tram::Deresa:Keilegom:2023}, the implementation here is discussed
| ^
checkRd: (-1) Compris.Rd:79: Lost braces
79 | in \bibcitet{tram::Siegfried:Tamasi:Hothorn:2026}.
| ^
prepare_Rd: ./man/Coxph.Rd:52: unknown macro '\bibcitet'
prepare_Rd: ./man/Coxph.Rd:62: unknown macro '\bibcitet'
prepare_Rd: ./man/Coxph.Rd:63: unknown macro '\bibcitet'
prepare_Rd: ./man/Coxph.Rd:64: unknown macro '\bibcitet'
checkRd: (-1) Coxph.Rd:52: Lost braces
52 | \bibcitet{tram::McLain:Ghosh:2013}.
| ^
checkRd: (-1) Coxph.Rd:62: Lost braces
62 | can be found in \bibcitet{tram::Hothorn:Moest:Buehlmann:2017},
| ^
checkRd: (-1) Coxph.Rd:63: Lost braces
63 | \bibcitet{tram::Siegfried:Tamasi:Hothorn:2026}, and
| ^
checkRd: (-1) Coxph.Rd:64: Lost braces
64 | \bibcitet{tram::Hothorn:2018}.
| ^
prepare_Rd: ./man/Lehmann.Rd:44: unknown macro '\bibcitet'
checkRd: (-1) Lehmann.Rd:44: Lost braces
44 | This transformation model, introduced by \bibcitet{tram::Lehmann:1953}, uses the cumulative distribution function for the
| ^
prepare_Rd: ./man/Lm.Rd:60: unknown macro '\bibcitet'
prepare_Rd: ./man/Lm.Rd:61: unknown macro '\bibcitet'
checkRd: (-1) Lm.Rd:60: Lost braces
60 | can be found in \bibcitet{tram::Hothorn:Moest:Buehlmann:2017} and
| ^
checkRd: (-1) Lm.Rd:61: Lost braces
61 | \bibcitet{tram::Hothorn:2018}.
| ^
prepare_Rd: ./man/Polr.Rd:60: unknown macro '\bibcitet'
prepare_Rd: ./man/Polr.Rd:61: unknown macro '\bibcitet'
checkRd: (-1) Polr.Rd:60: Lost braces
60 | can be found in \bibcitet{tram::Hothorn:Moest:Buehlmann:2017} and
| ^
checkRd: (-1) Polr.Rd:61: Lost braces
61 | \bibcitet{tram::Hothorn:2018}.
| ^
prepare_Rd: ./man/Survreg.Rd:66: unknown macro '\bibcitet'
prepare_Rd: ./man/Survreg.Rd:67: unknown macro '\bibcitet'
prepare_Rd: ./man/Survreg.Rd:68: unknown macro '\bibcitet'
checkRd: (-1) Survreg.Rd:66: Lost braces
66 | can be found in \bibcitet{tram::Hothorn:Moest:Buehlmann:2017},
| ^
checkRd: (-1) Survreg.Rd:67: Lost braces
67 | \bibcitet{tram::Siegfried:Tamasi:Hothorn:2026}, and
| ^
checkRd: (-1) Survreg.Rd:68: Lost braces
68 | \bibcitet{tram::Hothorn:2018}.
| ^
prepare_Rd: ./man/mmlt.Rd:29: unknown macro '\bibcitet'
prepare_Rd: ./man/mmlt.Rd:31: unknown macro '\bibcitet'
prepare_Rd: ./man/mmlt.Rd:59: unknown macro '\bibcitet'
checkRd: (-1) mmlt.Rd:29: Lost braces
29 | described by \bibcitet{tram::Klein:Hothorn:Barbanti:2020}. If \code{FALSE}, parameters can be
| ^
checkRd: (-1) mmlt.Rd:31: Lost braces
31 | \bibcitet{tram::Klein:Hothorn:Barbanti:2020}. Using \code{conditional = FALSE} with probit-only models
| ^
checkRd: (-1) mmlt.Rd:59: Lost braces
59 | as described by \bibcitet{tram::Klein:Hothorn:Barbanti:2020}.
| ^
prepare_Rd: ./man/mtram.Rd:43: unknown macro '\bibcitet'
checkRd: (-1) mtram.Rd:43: Lost braces
43 | \bibcitet{tram::Barbanti:Hothorn:2023} and examples are given in the \code{mtram} package vignette.
| ^
prepare_Rd: ./man/robust_score_test.Rd:60: unknown macro '\bibcitet'
checkRd: (-1) robust_score_test.Rd:60: Lost braces
60 | see \bibcitet{tram::Kook:Saengkyongam:Lundborg:2024}.
| ^
prepare_Rd: ./man/score_test.Rd:45: unknown macro '\bibcitet'
checkRd: (-1) score_test.Rd:45: Lost braces
45 | Model scores are available from \bibcitet{tram::Hothorn:Moest:Buehlmann:2017}.
| ^
prepare_Rd: ./man/tram-methods.Rd:161: unknown macro '\bibcitet'
checkRd: (-1) tram-methods.Rd:161: Lost braces
161 | \bibcitet{tram::Sewak:Hothorn:2023}.
| ^
prepare_Rd: ./man/tram.Rd:156: unknown macro '\bibcitet'
prepare_Rd: ./man/tram.Rd:158: unknown macro '\bibcitet'
prepare_Rd: ./man/tram.Rd:159: unknown macro '\bibcitet'
checkRd: (-1) tram.Rd:156: Lost braces
156 | is presented in \bibcitet{tram::Hothorn:Moest:Buehlmann:2017}, computational
| ^
checkRd: (-1) tram.Rd:158: Lost braces
158 | are discussed by \bibcitet{Hothorn:2018}. Location-scale transformation
| ^
checkRd: (-1) tram.Rd:159: Lost braces
159 | models have been introduced by \bibcitet{tram::Siegfried:Kook:Hothorn:2023}.
| ^
Flavor: r-release-linux-x86_64
Version: 1.4-0
Check: tests
Result: ERROR
Running ‘Coxph-Ex.R’ [10s/13s]
Comparing ‘Coxph-Ex.Rout’ to ‘Coxph-Ex.Rout.save’ ... OK
Running ‘KaplanMeier-Ex.R’ [2s/3s]
Running ‘PI_OVL-Ex.R’ [4s/5s]
Running ‘Polr-Ex.R’ [10s/12s]
Comparing ‘Polr-Ex.Rout’ to ‘Polr-Ex.Rout.save’ ... OK
Running ‘Survreg-Ex.R’ [4s/5s]
Comparing ‘Survreg-Ex.Rout’ to ‘Survreg-Ex.Rout.save’ ... OK
Running ‘bugfixes.R’ [71s/87s]
Running ‘intercepts-Ex.R’ [4s/5s]
Comparing ‘intercepts-Ex.Rout’ to ‘intercepts-Ex.Rout.save’ ... OK
Running ‘mmlt-Ex.R’ [144s/191s]
Comparing ‘mmlt-Ex.Rout’ to ‘mmlt-Ex.Rout.save’ ...931c931
< [1] "Mean relative difference: 3.3"
---
> [1] TRUE
Running ‘mmlt-interface.R’ [9s/12s]
Running ‘mtram-Ex.R’ [10s/12s]
Comparing ‘mtram-Ex.Rout’ to ‘mtram-Ex.Rout.save’ ...63,64d62
< attr(,"class")
< [1] "vcmat_us" "matrix" "array"
Running ‘stram-Ex.R’ [27s/35s]
Comparing ‘stram-Ex.Rout’ to ‘stram-Ex.Rout.save’ ... OK
Running the tests in ‘tests/mmlt-interface.R’ failed.
Complete output:
>
> library("tram")
Loading required package: mlt
Loading required package: basefun
Loading required package: variables
Loading required package: mvtnorm
> library("survival")
> library("sandwich")
> library("numDeriv")
> library("mvtnorm")
>
> ### check mmlt for wild model combinations and weights
>
> set.seed(290875)
>
> chk <- function(x, y, tol = 1e-2) stopifnot(all.equal(x, y, tol = tol))
>
> N <- 100
> J <- 3
>
> ### weights
> w <- as.double(sample(0:5, size = N, replace = TRUE))
> ### X1, X2, X3 correlated
> z <- matrix(rnorm(N * J), nrow = J)
> L <- ltMatrices(runif(J * (J - 1) / 2))
> y <- t(solve(standardize(L), z))
> ### uncorrelated ordered
> x <- sample(gl(5, N / 5, ordered = TRUE))
> ### X3 right censored
> e <- sample(c(TRUE, FALSE), size = N, replace = TRUE)
> X3 <- exp(y[,3])
> X3 <- Surv(X3, event = e)
> d <- data.frame(y[,1:2], X3, x, e)
> dw <- d[rep(1:nrow(d), w),,drop = FALSE]
> idx <- sample(1:N, size = N / 2)
>
> ### global options (speed-up estimation)
> M <- 200
> args <- list(type = "ghalton", M = M)
> op <- mltoptim() ### no hessian
>
> ### marginal models (use Lm to reduce number of parameters)
> m1 <- Lm(X1 ~ 1, data = d)
> m2 <- Lm(X2 ~ 1, data = d)
> m3 <- Lm(X3 ~ 1, data = d)
> m4 <- Polr(x ~ 1, data = d, method = "probit")
>
> ### joint distribution of X1, X2 (continuous), X3 (continuous and
> ### right-censored) and x (discrete)
> m <- mmlt(m1, m2, m3, m4, data = d, args = args, optim = op)
> l1 <- logLik(m)
> ## check gradient
> s1 <- -colSums(estfun(m))
> s2 <- grad(function(parm) logLik(m, parm = parm), coef(m))
> chk(s2, unname(s1))
> L1 <- aperm(coef(m, type = "Lambda"), perm = c("X1", "X2", "X3", "x"))
Error in aperm.ltMatrices(coef(m, type = "Lambda"), perm = c("X1", "X2", :
Cannot permute objects of class ltMatrices,
consider calling as.chol() or as.invchol() first
Calls: aperm -> aperm.ltMatrices
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.4-0
Flags: --no-vignettes
Check: tests
Result: NOTE
Running 'Coxph-Ex.R' [12s]
Comparing 'Coxph-Ex.Rout' to 'Coxph-Ex.Rout.save' ... OK
Running 'KaplanMeier-Ex.R' [3s]
Running 'PI_OVL-Ex.R' [3s]
Running 'Polr-Ex.R' [10s]
Comparing 'Polr-Ex.Rout' to 'Polr-Ex.Rout.save' ... OK
Running 'Survreg-Ex.R' [5s]
Comparing 'Survreg-Ex.Rout' to 'Survreg-Ex.Rout.save' ... OK
Running 'bugfixes.R' [67s]
Running 'intercepts-Ex.R' [4s]
Comparing 'intercepts-Ex.Rout' to 'intercepts-Ex.Rout.save' ... OK
Running 'mmlt-Ex.R' [100s]
Comparing 'mmlt-Ex.Rout' to 'mmlt-Ex.Rout.save' ... OK
Running 'mmlt-interface.R' [33s]
Running 'mtram-Ex.R' [10s]
Comparing 'mtram-Ex.Rout' to 'mtram-Ex.Rout.save' ...63,64d62
< attr(,"class")
< [1] "vcmat_us" "matrix" "array"
Running 'stram-Ex.R' [40s]
Comparing 'stram-Ex.Rout' to 'stram-Ex.Rout.save' ... OK
Flavor: r-release-windows-x86_64
Current CRAN status: OK: 14
Current CRAN status: OK: 14
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.