CRAN Package Check Results for Maintainer ‘Tal Galili <tal.galili at gmail.com>’

Last updated on 2024-05-02 06:12:32 CEST.

Package	NOTE	OK
dendextend	12
edfun	12
gplots	13
heatmaply	12
installr	9	3

Package dendextend

Current CRAN status: NOTE: 12

Version: 1.17.1
Check: Rd files
Result: NOTE checkRd: (-1) assign_values_to_leaves_edgePar.Rd:60: Lost braces 60 | \link{get_leaves_attr}, link{assign_values_to_leaves_nodePar} | ^ checkRd: (-1) khan.Rd:10-11: Lost braces in \itemize; meant \describe ? checkRd: (-1) khan.Rd:12-13: Lost braces in \itemize; meant \describe ? checkRd: (-1) khan.Rd:14-15: Lost braces in \itemize; meant \describe ? checkRd: (-1) khan.Rd:16-18: Lost braces in \itemize; meant \describe ? checkRd: (-1) khan.Rd:19-21: Lost braces in \itemize; meant \describe ? checkRd: (-1) khan.Rd:22-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) khan.Rd:26: Lost braces in \itemize; meant \describe ? checkRd: (-1) khan.Rd:27: Lost braces in \itemize; meant \describe ? checkRd: (-1) khan.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) khan.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) khan.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) khan.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) khan.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) khan.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) ladderize.Rd:59: Lost braces; missing escapes or markup? 59 | \code{\link{rev.dendrogram}}, \code{\link{rotate}} ({dendextend}), \code{\link[ape]{rotate}} ({ape}) | ^ checkRd: (-1) ladderize.Rd:59: Lost braces; missing escapes or markup? 59 | \code{\link{rev.dendrogram}}, \code{\link{rotate}} ({dendextend}), \code{\link[ape]{rotate}} ({ape}) | ^ checkRd: (-1) prune.Rd:62: Lost braces; missing escapes or markup? 62 | \link{prune_leaf}, \link[ape]{drop.tip} {ape} | ^ checkRd: (-1) rllply.Rd:25: Lost braces; missing escapes or markup? 25 | following the naming convention in the {plyr} package | ^ checkRd: (-1) rotate.Rd:81: Lost braces; missing escapes or markup? 81 | The {ape} package has its own \code{\link[ape]{rotate}}({ape}) function | ^ checkRd: (-1) rotate.Rd:81: Lost braces; missing escapes or markup? 81 | The {ape} package has its own \code{\link[ape]{rotate}}({ape}) function | ^ checkRd: (-1) rotate.Rd:86: Lost braces; missing escapes or markup? 86 | Notice that if you will first load {ape} and only then {dendextend}, | ^ checkRd: (-1) rotate.Rd:86: Lost braces; missing escapes or markup? 86 | Notice that if you will first load {ape} and only then {dendextend}, | ^ checkRd: (-1) rotate.Rd:92: Lost braces; missing escapes or markup? 92 | The solution for this is that if you have {ape} installed on your machine, | ^ checkRd: (-1) rotate.Rd:93: Lost braces; missing escapes or markup? 93 | It will be loaded when you load {dendextend} (but after it). | ^ checkRd: (-1) rotate.Rd:134: Lost braces; missing escapes or markup? 134 | \code{\link{rev.dendrogram}}, \code{\link[ape]{rotate}} ({ape}), \link{ladderize} | ^ checkRd: (-1) unbranch.Rd:47: Lost braces; missing escapes or markup? 47 | \link[ape]{unroot} {ape} | ^ checkRd: (-1) untangle_DendSer.Rd:22: Lost braces 22 | This is a good (and fast) starting point for link{untangle_step_rotate_2side} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64

Version: 1.17.1
Check: installed package size
Result: NOTE installed size is 5.4Mb sub-directories of 1Mb or more: doc 4.2Mb Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.17.1
Check: package dependencies
Result: NOTE Package which this enhances but not available for checking: ‘WGCNA’ Flavor: r-oldrel-macos-arm64

Version: 1.17.1
Check: Rd cross-references
Result: NOTE Package unavailable to check Rd xrefs: ‘WGCNA’ Flavor: r-oldrel-macos-arm64

Package edfun

Current CRAN status: NOTE: 12

Version: 0.2.0
Check: package subdirectories
Result: NOTE Problems with news in ‘NEWS.md’: Cannot extract version info from the following section titles: TODO: Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.2.0
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package gplots

Current CRAN status: NOTE: 13

Version: 3.1.3.1
Check: Rd files
Result: NOTE checkRd: (-1) barplot2.Rd:219: Escaped LaTeX specials: \_ checkRd: (-1) colorpanel.Rd:31: Escaped LaTeX specials: \# checkRd: (-1) qqnorm.aov.Rd:33: Escaped LaTeX specials: \& checkRd: (-1) venn.Rd:21: Lost braces 21 | in code{data} not in this list will be ignored. Use \code{NA} to | ^ checkRd: (-1) venn.Rd:59: Escaped LaTeX specials: \_ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64

Version: 3.1.3.1
Check: Rd files
Result: NOTE checkRd: (-1) barplot2.Rd:219: Escaped LaTeX specials: \_ checkRd: (-1) colorpanel.Rd:31: Escaped LaTeX specials: \# checkRd: (-1) qqnorm.aov.Rd:33: Escaped LaTeX specials: \& checkRd: (-1) venn.Rd:59: Escaped LaTeX specials: \_ Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package heatmaply

Current CRAN status: NOTE: 12

Version: 1.5.0
Check: Rd files
Result: NOTE checkRd: (-1) heatmaply.Rd:282: Lost braces 282 | row and column dendrograms. The default uses stats{reorder.dendrogram}} | ^ checkRd: (-1) heatmapr.Rd:93: Lost braces 93 | \item{reorderfun}{function(d, w) of dendrogram and weights for reordering the row and column dendrograms. The default uses stats{reorder.dendrogram}} | ^ checkRd: (-1) is.plotly.Rd:16: Lost braces 16 | Helpful for the plot_method in link{heatmaply}. | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64

Version: 1.5.0
Check: installed package size
Result: NOTE installed size is 5.5Mb sub-directories of 1Mb or more: doc 5.1Mb Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Package installr

Current CRAN status: NOTE: 9, OK: 3

Version: 0.23.4
Check: Rd files
Result: NOTE checkRd: (-1) ask.user.yn.question.Rd:44: Lost braces; missing escapes or markup? 44 | menu in the {utils} package, yesno in the {devtools} package. | ^ checkRd: (-1) ask.user.yn.question.Rd:44: Lost braces; missing escapes or markup? 44 | menu in the {utils} package, yesno in the {devtools} package. | ^ checkRd: (-1) install.FFmpeg.Rd:25: Lost braces; missing escapes or markup? 25 | This function is useful for saveVideo() in the {animation} package. | ^ checkRd: (-1) install.SWFTools.Rd:27: Lost braces; missing escapes or markup? 27 | This function is useful for saveSWF() in the {animation} package. | ^ checkRd: (-1) os.shutdown.Rd:25: Lost braces; missing escapes or markup? 25 | This function is a modified version of Yihui's shutdown function from the {fun} package. | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64

Version: 0.23.4
Check: for non-standard things in the check directory
Result: NOTE Found the following files/directories: ‘pkgbuild’ Flavor: r-devel-linux-x86_64-fedora-gcc