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Last updated on 2026-04-17 11:54:27 CEST.
| Package | ERROR | NOTE |
|---|---|---|
| EHR | 1 | 13 |
| medExtractR | 1 | 13 |
| PhysicalActivity | 14 |
Current CRAN status: ERROR: 1, NOTE: 13
Version: 0.4-11
Check: Rd files
Result: NOTE
checkRd: (-1) build_lastdose.Rd:10: Lost braces
10 | code{build_lastdose}: build PK oral with lastdose information
| ^
checkRd: (-1) mod-internal.Rd:18: Lost braces
18 | code{colflow_mod}: build a comparison of potentially duplicate flow data
| ^
checkRd: (-1) mod-internal.Rd:21: Lost braces
21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time
| ^
checkRd: (-1) mod-internal.Rd:23: Lost braces
23 | code{flowData_mod}: correct flow data
| ^
checkRd: (-1) mod-internal.Rd:25: Lost braces
25 | code{concData_mod}: correct concentration data
| ^
checkRd: (-1) mod-internal.Rd:27: Lost braces
27 | code{infusionData_mod}: combine flow and MAR data; standardize hourly rate,
| ^
checkRd: (-1) mod-internal.Rd:30: Lost braces
30 | code{resolveDoseDups_mod}: correct duplicated infusion and bolus doses
| ^
checkRd: (-1) mod-internal.Rd:32: Lost braces
32 | code{writeCheckData}
| ^
checkRd: (-1) mod-internal.Rd:34: Lost braces
34 | code{processErx}: prepare e-prescription data
| ^
checkRd: (-1) mod-internal.Rd:36: Lost braces
36 | code{processErxAddl}: additional processing, checking for connected observations
| ^
checkRd: (-1) mod-internal.Rd:38: Lost braces
38 | code{validateColumns}: check columns are in place
| ^
checkRd: (-1) mod-internal.Rd:40: Lost braces
40 | code{read}: generic read function
| ^
checkRd: (-1) mod-internal.Rd:42: Lost braces
42 | code{setDoseMar}: set unit/rate/date columns
| ^
checkRd: (-1) pk-internal.Rd:19: Lost braces
19 | code{takeClosest}: take value at nearest time
| ^
checkRd: (-1) pk-internal.Rd:22: Lost braces
22 | code{takeClosestTime}: find nearest time
| ^
checkRd: (-1) pk-internal.Rd:24: Lost braces
24 | code{daysDiff}: number of days between two dates
| ^
checkRd: (-1) pk-internal.Rd:26: Lost braces
26 | code{minDiff}: difference (in minutes) of time vector
| ^
checkRd: (-1) pk-internal.Rd:28: Lost braces
28 | code{fixDates}: add leading zeroes to date
| ^
checkRd: (-1) pk-internal.Rd:30: Lost braces
30 | code{joinFlowMar}: rbind two data sets
| ^
checkRd: (-1) pk-internal.Rd:32: Lost braces
32 | code{updateInterval_mod}: replace maxint with difference between surgery time
| ^
checkRd: (-1) pk-internal.Rd:35: Lost braces
35 | code{fix_serum_time}: create time variable
| ^
checkRd: (-1) pk-internal.Rd:37: Lost braces
37 | code{merge_by_time}: impute in x by closest time in y
| ^
checkRd: (-1) pk-internal.Rd:39: Lost braces
39 | code{merge_inf_bolus}: combine infusion and bolus into one hourly dose file
| ^
checkRd: (-1) pk-internal.Rd:41: Lost braces
41 | code{addZeroDose}: add rows of zero dose, after a gap
| ^
checkRd: (-1) pk-internal.Rd:43: Lost braces
43 | code{pkdata}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.4-11
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'ehr_vignette_01_mxr.Rmd' using rmarkdown
! Package pdftex.def Error: File `ffe4052c5e0fb03765397ee5722435a38505c915.pdf'
not found: using draft setting.
Error: processing vignette 'ehr_vignette_01_mxr.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/EHR.Rcheck/vign_test/EHR/vignettes/ehr_vignette_01_mxr.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See ehr_vignette_01_mxr.log for more info.
--- failed re-building 'ehr_vignette_01_mxr.Rmd'
--- re-building 'ehr_vignette_02_str.Rmd' using rmarkdown
--- finished re-building 'ehr_vignette_02_str.Rmd'
--- re-building 'ehr_vignette_03_DoseBuilding.Rmd' using rmarkdown
--- finished re-building 'ehr_vignette_03_DoseBuilding.Rmd'
--- re-building 'ehr_vignette_04_Build_PK_Oral.Rmd' using rmarkdown
--- finished re-building 'ehr_vignette_04_Build_PK_Oral.Rmd'
SUMMARY: processing the following file failed:
'ehr_vignette_01_mxr.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: ERROR: 1, NOTE: 13
Version: 0.4.1
Check: Rd files
Result: NOTE
checkRd: (-1) strings-internal.Rd:14: Lost braces
14 | code{stringPlaceExact}: find location of string, using exact match
| ^
checkRd: (-1) strings-internal.Rd:17: Lost braces
17 | code{stringPlaceFuzzy}: find location of string, using partial match
| ^
checkRd: (-1) strings-internal.Rd:19: Lost braces
19 | code{stringPlace}: find location of string, generic
| ^
checkRd: (-1) strings-internal.Rd:21: Lost braces
21 | code{checkFuzzy}: check for "close" string matches
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.4.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'mxr_basic_vignette.Rmd' using rmarkdown
! Package pdftex.def Error: File `852bdd6b927af946e04ec0803a182f56c67d050b.pdf'
not found: using draft setting.
Error: processing vignette 'mxr_basic_vignette.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/medExtractR.Rcheck/vign_test/medExtractR/vignettes/mxr_basic_vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See mxr_basic_vignette.log for more info.
--- failed re-building 'mxr_basic_vignette.Rmd'
--- re-building 'mxr_drug_list.Rmd' using rmarkdown
Warning in for (i in seq_len(n)) { :
closing unused connection 5 (<-CRANWIN2.fb05.statistik.uni-dortmund.de:11173)
Warning in for (i in seq_len(n)) { :
closing unused connection 4 (<-CRANWIN2.fb05.statistik.uni-dortmund.de:11173)
! Package pdftex.def Error: File `9c726bde599e232648b9a7129016b76863b912a8.png'
not found: using draft setting.
Error: processing vignette 'mxr_drug_list.Rmd' failed with diagnostics:
LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/medExtractR.Rcheck/vign_test/medExtractR/vignettes/mxr_drug_list.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See mxr_drug_list.log for more info.
--- failed re-building 'mxr_drug_list.Rmd'
--- re-building 'mxr_tapering_vignette.Rmd' using rmarkdown
--- finished re-building 'mxr_tapering_vignette.Rmd'
SUMMARY: processing the following files failed:
'mxr_basic_vignette.Rmd' 'mxr_drug_list.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64
Current CRAN status: NOTE: 14
Version: 0.2-4
Check: Rd files
Result: NOTE
checkRd: (-1) pa-internal.Rd:11: Lost braces
11 | code{l2df}: convert list to data.frame
| ^
checkRd: (-1) pa-internal.Rd:14: Lost braces
14 | code{convertTZ}: force a new timezone on datetime
| ^
checkRd: (-1) pa-internal.Rd:16: Lost braces
16 | code{createTime}: create datetime variable
| ^
checkRd: (-1) pa-internal.Rd:18: Lost braces
18 | code{addDayIndex}: create ID_day variable from timestamp
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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