matrixStats: Functions that Apply to Rows and Columns of Matrices (and to Vectors)

High-performing functions operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized. There are also optimized vector-based methods, e.g. binMeans(), madDiff() and weightedMedian().

Version:	1.3.0
Depends:	R (≥ 2.12.0)
Suggests:	utils, base64enc, ggplot2, knitr, markdown, microbenchmark, R.devices, R.rsp
Published:	2024-04-11
Author:	Henrik Bengtsson [aut, cre, cph], Constantin Ahlmann-Eltze [ctb], Hector Corrada Bravo [ctb], Robert Gentleman [ctb], Jan Gleixner [ctb], Peter Hickey [ctb], Ola Hossjer [ctb], Harris Jaffee [ctb], Dongcan Jiang [ctb], Peter Langfelder [ctb], Brian Montgomery [ctb], Angelina Panagopoulou [ctb], Hugh Parsonage [ctb], Jakob Peder Pettersen [ctb]
Maintainer:	Henrik Bengtsson <henrikb at braju.com>
BugReports:	https://github.com/HenrikBengtsson/matrixStats/issues
License:	Artistic-2.0
URL:	https://github.com/HenrikBengtsson/matrixStats
NeedsCompilation:	yes
Materials:	NEWS
CRAN checks:	matrixStats results

Documentation:

Reference manual:	matrixStats.pdf
Vignettes:	matrixStats: Summary of functions

Downloads:

Package source:	matrixStats_1.3.0.tar.gz
Windows binaries:	r-devel: matrixStats_1.3.0.zip, r-release: matrixStats_1.3.0.zip, r-oldrel: matrixStats_1.3.0.zip
macOS binaries:	r-release (arm64): matrixStats_1.3.0.tgz, r-oldrel (arm64): matrixStats_1.3.0.tgz, r-release (x86_64): matrixStats_1.3.0.tgz, r-oldrel (x86_64): matrixStats_1.3.0.tgz
Old sources:	matrixStats archive

Reverse dependencies:

Reverse depends:	antiProfiles, aSPU, bahc, BayesTwin, BRISC, BSW, Clomial, CopulaGAMM, DEqMS, DisHet, ExCluster, FastPCS, FastRCS, GGPA, InfiniumPurify, localgauss, MatrixGenerics, methylumi, OptHoldoutSize, POMaSPU, Qest, Rediscover, RnBeads, SICtools, sindyr, SPARRAfairness, StructFDR, ttScreening, wateRmelon
Reverse imports:	abcrf, ablasso, ACNE, ActivityIndex, airpart, AlpsNMR, AMARETTO, amplican, apollo, aroma.affymetrix, aroma.cn, aroma.core, aroma.light, atena, autonomics, Banksy, BASiCS, BatchQC, BayesfMRI, BayesianPlatformDesignTimeTrend, baystability, bcf, bigstep, BindingSiteFinder, bingat, binsreg, BioNERO, biscuiteer, blackbox, BloodGen3Module, bnbc, bnclassify, bnem, BREADR, brms, BSgenome, bspcov, bulkAnalyseR, bumphunter, calmate, Canek, CARBayesST, cardelino, CATALYST, causalOT, ccImpute, CDI, celda, CelliD, cellmigRation, cellWise, CEMiTool, Chicago, ChIPpeakAnno, CIPerm, clusterExperiment, clustifyr, cmapR, cna, cnaOpt, CNVScope, coconots, coin, cointmonitoR, cointReg, cola, compcodeR, ComplexHeatmap, condiments, conformalbayes, conquer, consensus, consensusOV, cophescan, corrcoverage, cosinor2, countts, CpGFilter, CRISPRball, crlmm, crossmeta, csdR, cSEM, CureDepCens, cvCovEst, cytofQC, cytomapper, cytoMEM, DAMOCLES, DCATS, DCLEAR, ddtlcm, dearseq, decompr, deconvR, DELocal, DeMixT, DepCens, DepecheR, DepInfeR, DESeq2, DHS.rates, diffUTR, Dino, disbayes, DiscoRhythm, DMCFB, dmrseq, DMtest, Doscheda, doseR, dplR, DSWE, dwp, eaf, easier, ecospat, eGST, EMDomics, EMMAgeo, ENmix, EnrichedHeatmap, EpiDISH, epimutacions, epistasisGA, eseis, evaluomeR, EventPointer, ExceedanceTools, expss, extraChIPs, FADA, fairsubset, familial, FateID, FEAST, felp, fergm, fipp, fishpond, flexmsm, flocker, flowCore, flowGraph, flowWorkspace, fMRItools, footBayes, FRASER, funcharts, funtooNorm, GAD, gcapc, gDNAx, GenEst, geneticae, GeneTonic, genomation, GenomAutomorphism, geocmeans, geva, ggdmc, GJRM, glmGamPoi, GLMMadaptive, GNET2, GPGame, GRaNIE, graper, GUIDEseq, GUniFrac, Gviz, gwasurvivr, GWENA, HACSim, haldensify, Harman, hbamr, HDSpatialScan, hermes, HERON, hipathia, Hmsc, ICBioMark, IMIFA, ImpactEffectsize, incidental, InDisc, iNETgrate, Infusion, iPath, iperform, iraceplot, JMbayes2, JointFPM, jointseg, kgschart, kissDE, kpmt, latrend, LDM, ldsep, lemur, LFDREmpiricalBayes, liger, liminal, locaR, loo, LS2Wstat, lspartition, ltmle, Luminescence, M3Drop, magpie, maic, matrixTests, mbsts, mcmcsae, MEAL, MEDseq, memes, metabCombiner, MetabolicSurv, metagenomeSeq, metamicrobiomeR, MetaNeighbor, methrix, MethylAid, mgcViz, miclust, microbiomeExplorer, MicrobiomeStat, miesmuschel, migest, miloR, MiMIR, MinimumDistance, miRecSurv, mixOmics, mnem, moanin, MOCHA, MoEClust, monocle, MOSim, motifbreakR, motifTestR, mrfDepth, msImpute, mult.latent.reg, multinomialLogitMix, multistateQTL, multivarious, muscat, mvgam, mvpd, mzipmed, NanoStringDiff, nbconv, nearBynding, nempi, nestedcv, netZooR, neurobase, nn2poly, nnSVG, NormalyzerDE, nparMD, obfuscatoR, occupancy, omicplotR, omicsPrint, omicsViewer, omicwas, OncoBayes2, OptimalDesign, Ostats, OUTRIDER, pandaR, pARI, PathoStat, PDATK, pecora, penppml, PepsNMR, pgKDEsphere, phosphonormalizer, Pigengene, PINSPlus, pipeComp, PlackettLuce, pmp, posterior, ProteoMM, PSCBS, QDNAseq, Qindex, RAC, RaceID, rADA, RadioGx, ramr, RandomForestsGLS, randomGLM, randomizationInference, RBesT, RCarb, recommenderlab, reconsi, reservr, RGCCA, rhierbaps, RiboDiPA, RJcluster, RNAmodR, RNAseqQC, robustlm, Rogue, RolDE, rpm, rsvddpd, RTCC, rTLsDeep, rtrend, rvec, samr, SANvi, scDataviz, scDesign3, scDHA, SCFA, scISR, scmap, scMET, scMultiSim, scone, scp, scPCA, scPloidy, scpoisson, sctransform, sechm, seeds, sensobol, seqArchR, Seurat, SGP, SIAMCAT, signifinder, simona, simPIC, simPop, singleCellTK, singscore, sizeMat, slasso, slingshot, SpaceMarkers, SparseArray, sparseMatrixStats, spathial, spatzie, spdesign, splatter, SpliceWiz, SPOTlight, spqn, SQI, SRTsim, stabiliser, stability, stagedtrees, stapler, staRdom, statar, stm, stoppingrule, summarytools, sumR, surveyPrev, susieR, sva, target, TaxaNorm, TCA, templateICAr, ThurMod, TopDom, topGO, tradeSeq, TRESS, UBayFS, Unico, UPG, VanillaICE, variancePartition, VaSP, vsclust, WaverideR, weakARMA, WeMix, WGCNA, Wrench, yarn
Reverse suggests:	ChemoSpec2D, cifti, COINr, DelayedMatrixStats, detrendr, dynamicSDM, epivizrData, EstimationTools, fastcpd, fastverse, FDb.FANTOM4.promoters.hg19, gap, GPUmatrix, grandR, limorhyde, Linnorm, LSAmitR, MethReg, methylumi, msqrob2, MultiBD, muscData, nandb, numbat, pcaMethods, ProteoDisco, QFeatures, regsem, RHRT, scHOT, scITD, sigminer, SimBu, Single.mTEC.Transcriptomes, sparrow, tidybulk, TOAST, tximport, zinbwave
Reverse enhances:	robustbase

Linking:

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