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omicwas: Cell-Type-Specific Association Testing in Bulk Omics Experiments
In bulk epigenome/transcriptome experiments, molecular expression
is measured in a tissue, which is a mixture of multiple types of cells.
This package tests association of a disease/phenotype with a molecular marker
for each cell type.
The proportion of cell types in each sample needs to be given as input.
The package is applicable to epigenome-wide association study (EWAS) and
differential gene expression analysis.
Takeuchi and Kato (submitted)
"omicwas: cell-type-specific epigenome-wide and transcriptome association study".
| Version: |
0.8.0 |
| Depends: |
R (≥ 3.6.0) |
| Imports: |
broom, data.table, dplyr, ff, glmnet, magrittr, MASS, matrixStats, parallel, purrr, rlang, tidyr |
| Suggests: |
testthat, knitr, rmarkdown |
| Published: |
2020-10-08 |
| Author: |
Fumihiko Takeuchi 
[aut, cre] |
| Maintainer: |
Fumihiko Takeuchi <fumihiko at takeuchi.name> |
| BugReports: |
https://github.com/fumi-github/omicwas/issues |
| License: |
GPL-3 |
| URL: |
https://github.com/fumi-github/omicwas |
| NeedsCompilation: |
no |
| Materials: |
README |
| In views: |
Omics |
| CRAN checks: |
omicwas results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=omicwas
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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