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statgenIBD: Calculation of IBD Probabilities
For biparental, three and four-way crosses Identity by Descent
(IBD) probabilities can be calculated using Hidden Markov Models and
inheritance vectors following Lander and Green
(<https://www.jstor.org/stable/29713>) and Huang
(<doi:10.1073/pnas.1100465108>). One of a series of statistical genetic
packages for streamlining the analysis of typical plant breeding experiments
developed by Biometris.
| Version: |
1.0.7 |
| Depends: |
R (≥ 3.6) |
| Imports: |
data.table, ggplot2, Matrix, rlang, Rcpp, statgenGWAS (≥
1.0.9), stringi |
| LinkingTo: |
Rcpp, RcppArmadillo |
| Suggests: |
rmarkdown, knitr, tinytest |
| Published: |
2024-02-02 |
| Author: |
Martin Boer  [aut],
Bart-Jan van Rossum
[aut, cre],
Wenhao Li [ctb],
Johannes Kruisselbrink
[ctb] |
| Maintainer: |
Bart-Jan van Rossum <bart-jan.vanrossum at wur.nl> |
| BugReports: |
https://github.com/Biometris/statgenIBD/issues |
| License: |
GPL-2 | GPL-3 [expanded from: GPL] |
| URL: |
https://biometris.github.io/statgenIBD/index.html,
https://github.com/Biometris/statgenIBD/ |
| NeedsCompilation: |
yes |
| Materials: |
README NEWS |
| In views: |
Agriculture |
| CRAN checks: |
statgenIBD results |
Documentation:
Downloads:
Reverse dependencies:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=statgenIBD
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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