The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
statgenIBD: Calculation of IBD Probabilities
For biparental, three and four-way crosses Identity by Descent
(IBD) probabilities can be calculated using Hidden Markov Models and
inheritance vectors following Lander and Green
(<https://www.jstor.org/stable/29713>) and Huang
(<doi:10.1073/pnas.1100465108>). One of a series of statistical genetic
packages for streamlining the analysis of typical plant breeding experiments
developed by Biometris.
| Version: |
1.0.7 |
| Depends: |
R (≥ 3.6) |
| Imports: |
data.table, ggplot2, Matrix, rlang, Rcpp, statgenGWAS (≥
1.0.9), stringi |
| LinkingTo: |
Rcpp, RcppArmadillo |
| Suggests: |
rmarkdown, knitr, tinytest |
| Published: |
2024-02-02 |
| DOI: |
10.32614/CRAN.package.statgenIBD |
| Author: |
Martin Boer  [aut],
Bart-Jan van Rossum
[aut, cre],
Wenhao Li [ctb],
Johannes Kruisselbrink
[ctb] |
| Maintainer: |
Bart-Jan van Rossum <bart-jan.vanrossum at wur.nl> |
| BugReports: |
https://github.com/Biometris/statgenIBD/issues |
| License: |
GPL-2 | GPL-3 [expanded from: GPL] |
| URL: |
https://biometris.github.io/statgenIBD/index.html,
https://github.com/Biometris/statgenIBD/ |
| NeedsCompilation: |
yes |
| Materials: |
README NEWS |
| In views: |
Agriculture |
| CRAN checks: |
statgenIBD results |
Documentation:
Downloads:
Reverse dependencies:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=statgenIBD
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.