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statgenMPP: QTL Mapping for Multi Parent Populations
For Multi Parent Populations (MPP) Identity By Descend (IBD)
probabilities are computed using Hidden Markov Models. These probabilities
are then used in a mixed model approach for QTL Mapping as described in
Li et al. (<doi:10.1007/s00122-021-03919-7>).
| Version: |
1.0.3 |
| Depends: |
R (≥ 3.6), statgenGWAS (≥ 1.0.9) |
| Imports: |
data.table, foreach, ggplot2, gridExtra, LMMsolver (≥ 1.0.5), Matrix, rlang, scales, spam, statgenIBD (≥ 1.0.5), stringi |
| Suggests: |
rmarkdown, knitr, tinytest |
| Published: |
2024-10-29 |
| DOI: |
10.32614/CRAN.package.statgenMPP |
| Author: |
Martin Boer  [aut],
Wenhao Li [aut],
Bart-Jan van Rossum
[aut, cre],
Fred van Eeuwijk
[ctb] |
| Maintainer: |
Bart-Jan van Rossum <bart-jan.vanrossum at wur.nl> |
| License: |
GPL (≥ 3) |
| NeedsCompilation: |
no |
| Citation: |
statgenMPP citation info |
| Materials: |
README NEWS |
| In views: |
Agriculture |
| CRAN checks: |
statgenMPP results |
Documentation:
Downloads:
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https://CRAN.R-project.org/package=statgenMPP
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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