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For Multi Parent Populations (MPP) Identity By Descend (IBD) probabilities are computed using Hidden Markov Models. These probabilities are then used in a mixed model approach for QTL Mapping as described in Li et al. (<doi:10.1007/s00122-021-03919-7>).
Version: | 1.0.2 |
Depends: | R (≥ 3.6), statgenGWAS (≥ 1.0.8) |
Imports: | data.table, foreach, ggplot2, gridExtra, LMMsolver, Matrix, scales, spam, statgenIBD (≥ 1.0.4), stringi |
Suggests: | rmarkdown, knitr, tinytest |
Published: | 2022-12-02 |
DOI: | 10.32614/CRAN.package.statgenMPP |
Author: | Wenhao Li |
Maintainer: | Bart-Jan van Rossum <bart-jan.vanrossum at wur.nl> |
License: | GPL (≥ 3) |
NeedsCompilation: | no |
Citation: | statgenMPP citation info |
Materials: | README NEWS |
In views: | Agriculture |
CRAN checks: | statgenMPP results |
Reference manual: | statgenMPP.pdf |
Vignettes: |
QTL Mapping in Multi-Parent Populations |
Package source: | statgenMPP_1.0.2.tar.gz |
Windows binaries: | r-devel: statgenMPP_1.0.2.zip, r-release: statgenMPP_1.0.2.zip, r-oldrel: statgenMPP_1.0.2.zip |
macOS binaries: | r-release (arm64): statgenMPP_1.0.2.tgz, r-oldrel (arm64): statgenMPP_1.0.2.tgz, r-release (x86_64): statgenMPP_1.0.2.tgz, r-oldrel (x86_64): statgenMPP_1.0.2.tgz |
Old sources: | statgenMPP archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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