runMCMCbtadjust: Runs Monte Carlo Markov Chain - With Either 'JAGS', 'nimble' or 'greta' - While Adjusting Burn-in and Thinning Parameters
The function runMCMC_btadjust() returns a mcmc.list object which is the output of a Markov Chain Monte Carlo obtained - from either 'JAGS', 'nimble' or 'greta' - after adjusting burn-in and thinning parameters to meet pre-specified criteria in terms of convergence & effective sample size. Used with 'nimble', runMCMC_btadjust() allows extra calculations (e.g. information criteria for model comparison and goodness-of-fit p-values for model diagnosis).
| Version: | 1.1.2 |
| Imports: | coda |
| Suggests: | nimble (≥ 1.0.0), rjags, runjags, greta, R6, tensorflow, ggmcmc, rstan, knitr, markdown, testthat (≥ 3.0.0), nimbleAPT (≥ 1.0.6), nimbleHMC, parallel, Hmisc, moments |
| Published: | 2024-08-28 |
| DOI: | 10.32614/CRAN.package.runMCMCbtadjust |
| Author: | Frédéric Gosselin 
[cre, aut] (INRAE),
Institut national de recherche pour l'agriculture, l'alimentation et
l'environnement [cph] (INRAE) |
| Maintainer: | Frédéric Gosselin <frederic.gosselin at inrae.fr> |
| License: | CECILL-2.1 |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | runMCMCbtadjust results |
Documentation:
| Reference manual: | runMCMCbtadjust.pdf |
| Vignettes: |
2- Nimble samplers (source) 1- runMCMCbtadjust Presentation (source) 3- Extra calculations with Nimble (source) |
Downloads:
| Package source: | runMCMCbtadjust_1.1.2.tar.gz |
| Windows binaries: | r-devel: runMCMCbtadjust_1.1.2.zip, r-release: runMCMCbtadjust_1.1.2.zip, r-oldrel: runMCMCbtadjust_1.1.2.zip |
| macOS binaries: | r-release (arm64): runMCMCbtadjust_1.1.2.tgz, r-oldrel (arm64): runMCMCbtadjust_1.1.2.tgz, r-release (x86_64): runMCMCbtadjust_1.1.2.tgz, r-oldrel (x86_64): runMCMCbtadjust_1.1.2.tgz |
| Old sources: | runMCMCbtadjust archive |
Linking:
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