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rrBLUP: Ridge Regression and Other Kernels for Genomic Selection

Software for genomic prediction with the RR-BLUP mixed model (Endelman 2011, <doi:10.3835/plantgenome2011.08.0024>). One application is to estimate marker effects by ridge regression; alternatively, BLUPs can be calculated based on an additive relationship matrix or a Gaussian kernel.

Version: 4.6.3
Depends: R (≥ 4.0)
Imports: stats, graphics, grDevices, parallel
Published: 2023-12-10
DOI: 10.32614/CRAN.package.rrBLUP
Author: Jeffrey Endelman
Maintainer: Jeffrey Endelman <endelman at wisc.edu>
License: GPL-3
URL: <https://potatobreeding.cals.wisc.edu/software/>
NeedsCompilation: no
Citation: rrBLUP citation info
Materials: NEWS
In views: Agriculture, MixedModels
CRAN checks: rrBLUP results

Documentation:

Reference manual: rrBLUP.pdf

Downloads:

Package source: rrBLUP_4.6.3.tar.gz
Windows binaries: r-devel: rrBLUP_4.6.3.zip, r-release: rrBLUP_4.6.3.zip, r-oldrel: rrBLUP_4.6.3.zip
macOS binaries: r-release (arm64): rrBLUP_4.6.3.tgz, r-oldrel (arm64): rrBLUP_4.6.3.tgz, r-release (x86_64): rrBLUP_4.6.3.tgz, r-oldrel (x86_64): rrBLUP_4.6.3.tgz
Old sources: rrBLUP archive

Reverse dependencies:

Reverse imports: BWGS, factReg, Ghat, GROAN, PopVar, RAINBOWR, STGS
Reverse suggests: BG2, dartR, dartR.base, dartR.captive, dartR.spatial, GWAS.BAYES, MoBPS, polyRAD

Linking:

Please use the canonical form https://CRAN.R-project.org/package=rrBLUP to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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