PopVar: Genomic Breeding Tools: Genetic Variance Prediction and Cross-Validation

The main attribute of 'PopVar' is the prediction of genetic variance in bi-parental populations, from which the package derives its name. 'PopVar' contains a set of functions that use phenotypic and genotypic data from a set of candidate parents to 1) predict the mean, genetic variance, and superior progeny value of all, or a defined set of pairwise bi-parental crosses, and 2) perform cross-validation to estimate genome-wide prediction accuracy of multiple statistical models. More details are available in Mohammadi, Tiede, and Smith (2015, <doi:10.2135/cropsci2015.01.0030>). A dataset 'think_barley.rda' is included for reference and examples.

Version:	1.3.2
Depends:	R (≥ 3.5.0)
Imports:	BGLR, qtl, rrBLUP, stats, utils, methods, parallel
Suggests:	knitr, rmarkdown
Published:	2024-10-20
DOI:	10.32614/CRAN.package.PopVar
Author:	Tyler Tiede [aut], Jeffrey Neyhart [aut, ctb, cre], Mohsen Mohammadi [ctb], Kevin Smith [ctb]
Maintainer:	Jeffrey Neyhart <neyhartje at gmail.com>
BugReports:	https://github.com/UMN-BarleyOatSilphium/PopVar/issues
License:	GPL-3
URL:	https://github.com/UMN-BarleyOatSilphium/PopVar
NeedsCompilation:	no
Materials:	README NEWS
In views:	Agriculture
CRAN checks:	PopVar results

Documentation:

Reference manual:	PopVar.pdf
Vignettes:	Using 'PopVar' (source, R code)

Downloads:

Package source:	PopVar_1.3.2.tar.gz
Windows binaries:	r-devel: PopVar_1.3.2.zip, r-release: PopVar_1.3.2.zip, r-oldrel: PopVar_1.3.2.zip
macOS binaries:	r-release (arm64): PopVar_1.3.2.tgz, r-oldrel (arm64): PopVar_1.3.2.tgz, r-release (x86_64): PopVar_1.3.2.tgz, r-oldrel (x86_64): PopVar_1.3.2.tgz
Old sources:	PopVar archive

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