pcvr: Plant Phenotyping and Bayesian Statistics
Analyse common types of plant phenotyping data, provide a simplified interface to longitudinal growth modeling and select Bayesian statistics, and streamline use of 'PlantCV' output. Several Bayesian methods and reporting guidelines for Bayesian methods are described in Kruschke (2018) <doi:10.1177/2515245918771304>, Kruschke (2013) <doi:10.1037/a0029146>, and Kruschke (2021) <doi:10.1038/s41562-021-01177-7>.
| Version: | 1.1.1.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | FactoMineR, rlang, stats, utils, methods, data.table, ggplot2, ggridges, igraph, jsonlite, lme4, patchwork, extraDistr, parallel, bayestestR, viridis, mgcv, quantreg, nlme, splines, lmeSplines, scales, survival, car |
| Suggests: | knitr, rmarkdown, brms, flexsurv, curl, cmdstanr, rstan, caret, testthat (≥ 3.0.0) |
| Published: | 2024-11-06 |
| DOI: | 10.32614/CRAN.package.pcvr |
| Author: | Josh Sumner  [aut,
cre],
Jeffrey Berry
[aut],
Noah Fahlgren
[rev],
Donald Danforth Plant Science Center [cph] |
| Maintainer: | Josh Sumner <jsumner at danforthcenter.org> |
| BugReports: | https://github.com/danforthcenter/pcvr/issues |
| License: | GPL-2 |
| URL: | https://github.com/danforthcenter/pcvr, https://plantcv.org/, https://danforthcenter.github.io/pcvr/ |
| NeedsCompilation: | no |
| Additional_repositories: | https://mc-stan.org/r-packages/ |
| Materials: | README NEWS |
| CRAN checks: | pcvr results |
Documentation:
| Reference manual: | pcvr.pdf |
| Vignettes: |
Bellwether (source, R code) Directional Statistics in PCVR (source, R code) Longitudinal Growth Modeling Options (source, R code) Root Traits (source, R code) |
Downloads:
| Package source: | pcvr_1.1.1.0.tar.gz |
| Windows binaries: | r-devel: pcvr_1.1.1.0.zip, r-release: pcvr_1.1.1.0.zip, r-oldrel: pcvr_1.1.1.0.zip |
| macOS binaries: | r-release (arm64): pcvr_1.1.1.0.tgz, r-oldrel (arm64): pcvr_1.1.1.0.tgz, r-release (x86_64): pcvr_1.1.1.0.tgz, r-oldrel (x86_64): pcvr_1.1.1.0.tgz |
| Old sources: | pcvr archive |
Linking:
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