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ontologyIndex: Reading Ontologies into R

Functions for reading ontologies into R as lists and manipulating sets of ontological terms - 'ontologyX: A suite of R packages for working with ontological data', Greene et al 2017 <doi:10.1093/bioinformatics/btw763>.

Version: 2.12
Depends: R (≥ 3.5.0)
Suggests: knitr, rmarkdown
Published: 2024-02-27
DOI: 10.32614/CRAN.package.ontologyIndex
Author: Daniel Greene
Maintainer: Daniel Greene <dg333 at cam.ac.uk>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Citation: ontologyIndex citation info
Materials: NEWS
CRAN checks: ontologyIndex results

Documentation:

Reference manual: ontologyIndex.pdf
Vignettes: Introduction to ontologyX
Creating an ontology_index

Downloads:

Package source: ontologyIndex_2.12.tar.gz
Windows binaries: r-devel: ontologyIndex_2.12.zip, r-release: ontologyIndex_2.12.zip, r-oldrel: ontologyIndex_2.12.zip
macOS binaries: r-release (arm64): ontologyIndex_2.12.tgz, r-oldrel (arm64): ontologyIndex_2.12.tgz, r-release (x86_64): ontologyIndex_2.12.tgz, r-oldrel (x86_64): ontologyIndex_2.12.tgz
Old sources: ontologyIndex archive

Reverse dependencies:

Reverse depends: CardinalIO, ontoFAST, ontoProc
Reverse imports: BiocSet, famat, fobitools, gsEasy, immunotation, ontologyPlot, ontologySimilarity, ontophylo, rmzqc, scOntoMatch, SimReg, struct
Reverse suggests: bugsigdbr, scDiffCom

Linking:

Please use the canonical form https://CRAN.R-project.org/package=ontologyIndex to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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