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SimReg: Similarity Regression

Similarity regression, evaluating the probability of association between sets of ontological terms and binary response vector. A no-association model is compared with one in which the log odds of a true response is linked to the semantic similarity between terms and a latent characteristic ontological profile - 'Phenotype Similarity Regression for Identifying the Genetic Determinants of Rare Diseases', Greene et al 2016 <doi:10.1016/j.ajhg.2016.01.008>.

Version: 3.4
Depends: R (≥ 3.0.0)
Imports: Rcpp (≥ 0.11.1), ontologyIndex (≥ 2.0), ontologySimilarity (≥ 2.0), ontologyPlot
LinkingTo: Rcpp
Suggests: knitr, rmarkdown
Published: 2024-02-21
DOI: 10.32614/CRAN.package.SimReg
Author: Daniel Greene
Maintainer: Daniel Greene <dg333 at cam.ac.uk>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
CRAN checks: SimReg results

Documentation:

Reference manual: SimReg.pdf
Vignettes: Similarity Regression - Introduction
Prior phenotypic information

Downloads:

Package source: SimReg_3.4.tar.gz
Windows binaries: r-devel: SimReg_3.4.zip, r-release: SimReg_3.4.zip, r-oldrel: SimReg_3.4.zip
macOS binaries: r-release (arm64): SimReg_3.4.tgz, r-oldrel (arm64): SimReg_3.4.tgz, r-release (x86_64): SimReg_3.4.tgz, r-oldrel (x86_64): SimReg_3.4.tgz
Old sources: SimReg archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=SimReg to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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