malan: MAle Lineage ANalysis

MAle Lineage ANalysis by simulating genealogies backwards and imposing short tandem repeats (STR) mutations forwards. Intended for forensic Y chromosomal STR (Y-STR) haplotype analyses. Numerous analyses are possible, e.g. number of matches and meiotic distance to matches. Refer to papers mentioned in citation("malan") (DOI's: <doi:10.1371/journal.pgen.1007028>, <doi:10.21105/joss.00684> and <doi:10.1016/j.fsigen.2018.10.004>).

Version:	1.0.3
Depends:	R (≥ 3.6), dplyr (≥ 0.7.3), tidygraph (≥ 1.0.0.9999)
Imports:	Rcpp (≥ 0.12.7), RcppProgress (≥ 0.2.1), RcppArmadillo (≥ 0.9.880.1.0), igraph (≥ 1.0.1), tibble (≥ 1.1), magrittr (≥ 1.5), methods
LinkingTo:	Rcpp, RcppArmadillo, RcppProgress
Suggests:	knitr, rmarkdown, testthat, ggraph, dirmult, Rmpfr
Published:	2023-11-28
DOI:	10.32614/CRAN.package.malan
Author:	Mikkel Meyer Andersen [aut, cre]
Maintainer:	Mikkel Meyer Andersen <mikl at math.aau.dk>
BugReports:	https://github.com/mikldk/malan/issues
License:	GPL-2 | file LICENSE
NeedsCompilation:	yes
Citation:	malan citation info
Materials:	README NEWS
CRAN checks:	malan results

Documentation:

Reference manual:	malan.pdf
Vignettes:	Case study: Partial profiles Introduction

Downloads:

Package source:	malan_1.0.3.tar.gz
Windows binaries:	r-devel: malan_1.0.3.zip, r-release: malan_1.0.3.zip, r-oldrel: malan_1.0.3.zip
macOS binaries:	r-release (arm64): malan_1.0.3.tgz, r-oldrel (arm64): malan_1.0.3.tgz, r-release (x86_64): malan_1.0.3.tgz, r-oldrel (x86_64): malan_1.0.3.tgz
Old sources:	malan archive

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