locuszoomr: Gene Locus Plot with Gene Annotations

Publication-ready regional gene locus plots similar to those produced by the web interface 'LocusZoom' <https://my.locuszoom.org>, but running locally in R. Genetic or genomic data with gene annotation tracks are plotted via R base graphics, 'ggplot2' or 'plotly', allowing flexibility and easy customisation including laying out multiple locus plots on the same page. It uses the 'LDlink' API <https://ldlink.nih.gov/?tab=apiaccess> to query linkage disequilibrium data from the 1000 Genomes Project and can overlay this on plots.

Version:	0.3.5
Depends:	R (≥ 3.5)
Imports:	AnnotationFilter, BiocGenerics, cowplot, dplyr, ensembldb, GenomeInfoDb, GenomicRanges, gggrid, ggplot2, ggrepel, graphics, grDevices, grid, IRanges, LDlinkR, memoise, plotly, rlang, rtracklayer, zoo
Suggests:	AnnotationHub, EnsDb.Hsapiens.v75, knitr, rmarkdown
Published:	2024-09-15
DOI:	10.32614/CRAN.package.locuszoomr
Author:	Myles Lewis [aut, cre]
Maintainer:	Myles Lewis <myles.lewis at qmul.ac.uk>
BugReports:	https://github.com/myles-lewis/locuszoomr/issues
License:	GPL (≥ 3)
URL:	https://github.com/myles-lewis/locuszoomr
NeedsCompilation:	no
Language:	en-gb
Materials:	README NEWS
CRAN checks:	locuszoomr results

Documentation:

Reference manual:	locuszoomr.pdf
Vignettes:	locuszoomr (source, R code)

Downloads:

Package source:	locuszoomr_0.3.5.tar.gz
Windows binaries:	r-devel: locuszoomr_0.3.5.zip, r-release: locuszoomr_0.3.5.zip, r-oldrel: locuszoomr_0.3.5.zip
macOS binaries:	r-release (arm64): locuszoomr_0.3.5.tgz, r-oldrel (arm64): locuszoomr_0.3.5.tgz, r-release (x86_64): locuszoomr_0.3.5.tgz, r-oldrel (x86_64): locuszoomr_0.3.5.tgz
Old sources:	locuszoomr archive

Linking:

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