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index_snp
to be a vector to highlight more than 1 SNP per region (suggested by Luke Pilling).LDproxy
in link_LD()
. This is now the default option.locus_plot()
, locus_ggplot()
, genetracks()
and gg_genetracks()
.link_recomb()
, which is much faster when plotting multiple loci.locus_ggplot()
and gg_scatter()
(thanks to Tom Willis).link_recomb()
locus_plot()
and locus_ggplot()
.scatter_plot()
arguments chromCol
and sigCol
are replaced by scheme
which now allows setting of the index SNP colour.gg_genetracks()
to enable easy layering of several ggplot2 plots above a row of gene tracks (thanks to nickhir for the suggestion).data
(or setting it to NULL
) when calling locus()
.quick_peak()
for quickly finding peaks in GWAS datasets.link_recomb()
for retrieving recombination data from UCSC.locus_plot()
and locus_ggplot()
....
to link_LD()
and link_eqtl()
to allow passing of additional arguments such as genome_build
to LDlinkR
queries.LDtoken
in link_LD()
and link_eqtl()
has been renamed token
to be consistent with LDlinkR
.locus_ggplot()
and locus_plotly()
.locus_plotly()
yzero
argument in scatter plotsThese binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.