The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
A comprehensive analysis tool for metabolomics data. It consists a variety of functional modules, including several new modules: a pre-processing module for normalization and imputation, an exploratory data analysis module for dimension reduction and source of variation analysis, a classification module with the new deep-learning method and other machine-learning methods, a prognosis module with cox-PH and neural-network based Cox-nnet methods, and pathway analysis module to visualize the pathway and interpret metabolite-pathway relationships. References: H. Paul Benton <http://www.metabolomics-forum.com/index.php?topic=281.0> Jeff Xia <https://github.com/cangfengzhe/Metabo/blob/master/MetaboAnalyst/website/name_match.R> Travers Ching, Xun Zhu, Lana X. Garmire (2018) <doi:10.1371/journal.pcbi.1006076>.
| Version: | 2.1.1 |
| Depends: | R (≥ 3.5.0) |
| Imports: | car, caret, dplyr, gbm, ggplot2, glmnet, h2o, impute, infotheo, limma, M3C, Metrics, MLmetrics, parallel, princurve, pathview, plyr, preprocessCore, pROC, RCy3, reticulate, reshape, RWeka, scales, stats, stringr, survminer, survival |
| Suggests: | knitr, rmarkdown |
| Published: | 2022-10-05 |
| DOI: | 10.32614/CRAN.package.lilikoi |
| Author: | Xinying Fang [aut], Yu Liu [aut], Zhijie Ren [aut], Fadhl Alakwaa [aut], Sijia Huang [aut], Lana Garmire [aut, cre] |
| Maintainer: | Lana Garmire <lana.garmire.group at gmail.com> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| Citation: | lilikoi citation info |
| Materials: | README NEWS |
| In views: | MissingData, Omics |
| CRAN checks: | lilikoi results |
| Reference manual: | lilikoi.pdf |
| Vignettes: |
Lilikoi V2.0 |
| Package source: | lilikoi_2.1.1.tar.gz |
| Windows binaries: | r-devel: lilikoi_2.1.1.zip, r-release: lilikoi_2.1.1.zip, r-oldrel: lilikoi_2.1.1.zip |
| macOS binaries: | r-release (arm64): lilikoi_2.1.1.tgz, r-oldrel (arm64): lilikoi_2.1.1.tgz, r-release (x86_64): lilikoi_2.1.1.tgz, r-oldrel (x86_64): lilikoi_2.1.1.tgz |
| Old sources: | lilikoi archive |
Please use the canonical form https://CRAN.R-project.org/package=lilikoi to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.