The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.
A Bayesian method for Phenome-wide association studies (PheWAS) that identifies causal associations between genetic variants and traits, while simultaneously addressing confounding due to linkage disequilibrium. For details see Manipur et al (2023) <doi:10.1101/2023.06.29.546856>.
| Version: | 1.4.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | Rcpp (≥ 1.0.7), coloc, data.table, ggplot2, ggrepel, pheatmap, methods, viridis, stats, grDevices, magrittr, utils, matrixStats, dplyr |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | knitr, testthat (≥ 3.0.0), rmarkdown, RColorBrewer, ggpubr |
| Published: | 2024-03-11 |
| Author: | Ichcha Manipur [aut, cre], Chris Wallace [aut] |
| Maintainer: | Ichcha Manipur <im504 at cam.ac.uk> |
| BugReports: | https://github.com/ichcha-m/cophescan/issues |
| License: | GPL-3 |
| URL: | https://github.com/ichcha-m/cophescan, https://ichcha-m.github.io/cophescan/ |
| NeedsCompilation: | yes |
| Citation: | cophescan citation info |
| Materials: | README NEWS |
| CRAN checks: | cophescan results |
| Reference manual: | cophescan.pdf |
| Vignettes: |
CoPheScan: Example with Fixed Priors CoPheScan: Example with Hierarchical Priors CoPheScan: Input data Introduction to CoPheScan |
| Package source: | cophescan_1.4.0.tar.gz |
| Windows binaries: | r-devel: cophescan_1.4.0.zip, r-release: cophescan_1.4.0.zip, r-oldrel: cophescan_1.4.0.zip |
| macOS binaries: | r-release (arm64): cophescan_1.4.0.tgz, r-oldrel (arm64): cophescan_1.4.0.tgz, r-release (x86_64): cophescan_1.4.0.tgz, r-oldrel (x86_64): cophescan_1.4.0.tgz |
| Old sources: | cophescan archive |
Please use the canonical form https://CRAN.R-project.org/package=cophescan to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.