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coloc: Colocalisation Tests of Two Genetic Traits

Performs the colocalisation tests described in Giambartolomei et al (2013) <doi:10.1371/journal.pgen.1004383>, Wallace (2020) <doi:10.1371/journal.pgen.1008720>, Wallace (2021) <doi:10.1371/journal.pgen.1009440>.

Version: 5.2.3
Depends: R (≥ 3.5)
Imports: data.table, ggplot2, methods, viridis, stats, grDevices, susieR (≥ 0.12.06), utils
Suggests: knitr, testthat, mvtnorm, magrittr, rmarkdown
Published: 2023-10-03
DOI: 10.32614/CRAN.package.coloc
Author: Chris Wallace [aut, cre], Claudia Giambartolomei [aut], Vincent Plagnol [ctb]
Maintainer: Chris Wallace <cew54 at cam.ac.uk>
BugReports: https://github.com/chr1swallace/coloc/issues
License: GPL-2 | GPL-3 [expanded from: GPL]
URL: https://github.com/chr1swallace/coloc
NeedsCompilation: no
Citation: coloc citation info
Materials: README NEWS
CRAN checks: coloc results

Documentation:

Reference manual: coloc.pdf
Vignettes: Coloc: a package for colocalisation analyses
Coloc: data structures
Coloc: under a single causal variant assumption
Coloc: sensitivity to prior values
DEPRECATED Coloc: relaxing the single causal variant assumption
Coloc: using SuSiE to relax the single causal variant assumption

Downloads:

Package source: coloc_5.2.3.tar.gz
Windows binaries: r-devel: coloc_5.2.3.zip, r-release: coloc_5.2.3.zip, r-oldrel: coloc_5.2.3.zip
macOS binaries: r-release (arm64): coloc_5.2.3.tgz, r-oldrel (arm64): coloc_5.2.3.tgz, r-release (x86_64): coloc_5.2.3.tgz, r-oldrel (x86_64): coloc_5.2.3.tgz
Old sources: coloc archive

Reverse dependencies:

Reverse imports: colocPropTest, cophescan, RapidoPGS

Linking:

Please use the canonical form https://CRAN.R-project.org/package=coloc to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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