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Functions for microbiome data analysis that take into account its compositional nature. Performs variable selection through penalized regression for both, cross-sectional and longitudinal studies, and for binary and continuous outcomes.
Version: | 0.2.4 |
Depends: | R (≥ 3.5.0) |
Imports: | corrplot, glmnet, plyr, pROC, ggpubr, ggplot2, ComplexHeatmap, circlize, survival, survminer |
Suggests: | rmarkdown |
Published: | 2024-07-17 |
DOI: | 10.32614/CRAN.package.coda4microbiome |
Author: | Malu Calle |
Maintainer: | Toni Susin <toni.susin at upc.edu> |
BugReports: | https://github.com/malucalle/coda4microbiome/issues |
License: | MIT + file LICENSE |
URL: | https://malucalle.github.io/coda4microbiome/ |
NeedsCompilation: | no |
CRAN checks: | coda4microbiome results |
Reference manual: | coda4microbiome.pdf |
Package source: | coda4microbiome_0.2.4.tar.gz |
Windows binaries: | r-devel: coda4microbiome_0.2.4.zip, r-release: coda4microbiome_0.2.4.zip, r-oldrel: coda4microbiome_0.2.4.zip |
macOS binaries: | r-release (arm64): coda4microbiome_0.2.4.tgz, r-oldrel (arm64): coda4microbiome_0.2.4.tgz, r-release (x86_64): coda4microbiome_0.2.4.tgz, r-oldrel (x86_64): coda4microbiome_0.2.4.tgz |
Old sources: | coda4microbiome archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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