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cfr: Estimate Disease Severity and Case Ascertainment

Estimate the severity of a disease and ascertainment of cases, as discussed in Nishiura et al. (2009) <doi:10.1371/journal.pone.0006852>.

Version: 0.1.0
Depends: R (≥ 3.5.0)
Imports: checkmate, stats
Suggests: dplyr, tidyr, purrr, scales, forcats, ggplot2, testthat (≥ 3.0.0), knitr, bookdown, spelling, incidence2, data.table, distributional, distcrete
Published: 2023-11-21
Author: Pratik R. Gupte ORCID iD [aut, cre, cph], Adam Kucharski ORCID iD [aut, cph], Tim Russell ORCID iD [aut, cph], Joshua W. Lambert ORCID iD [rev], Hugo Gruson ORCID iD [rev], Tim Taylor ORCID iD [rev], James M. Azam ORCID iD [rev], Abdoelnaser M. Degoot ORCID iD [rev], Sebastian Funk ORCID iD [rev]
Maintainer: Pratik R. Gupte <pratik.gupte at lshtm.ac.uk>
BugReports: https://github.com/epiverse-trace/cfr/issues
License: MIT + file LICENSE
URL: https://github.com/epiverse-trace/cfr, https://epiverse-trace.github.io/cfr/
NeedsCompilation: no
Language: en-GB
Materials: README NEWS
In views: Epidemiology
CRAN checks: cfr results

Documentation:

Reference manual: cfr.pdf
Vignettes: Estimating disease severity while correcting for reporting delays
Handling data from {incidence2}
A primer on working with delay distributions
Estimating the proportion of cases that are ascertained during an outbreak
Calculating a static, delay-adjusted estimate of disease severity
Estimating how disease severity varies over the course of an outbreak

Downloads:

Package source: cfr_0.1.0.tar.gz
Windows binaries: r-devel: cfr_0.1.0.zip, r-release: cfr_0.1.0.zip, r-oldrel: cfr_0.1.0.zip
macOS binaries: r-release (arm64): cfr_0.1.0.tgz, r-oldrel (arm64): cfr_0.1.0.tgz, r-release (x86_64): cfr_0.1.0.tgz, r-oldrel (x86_64): cfr_0.1.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=cfr to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.