incidence2: Compute, Handle and Plot Incidence of Dated Events
Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence2' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis (<https://www.reconverse.org>).
| Version: | 2.6.0 |
| Depends: | grates (≥ 1.3.0), R (≥ 4.1.0) |
| Imports: | grDevices, data.table, pillar, utils, stats, tibble, tidyr, dplyr (≥ 1.1.0), tidyselect, rlang, vctrs, ympes (≥ 1.3.0) |
| Suggests: | outbreaks, ggplot2, scales, knitr, markdown, testthat (≥ 3.0.0), ciTools, withr |
| Published: | 2024-11-22 |
| DOI: | 10.32614/CRAN.package.incidence2 |
| Author: | Tim Taylor  [aut,
cre],
Thibaut Jombart [ctb] |
| Maintainer: | Tim Taylor <tim.taylor at hiddenelephants.co.uk> |
| BugReports: | https://github.com/reconverse/incidence2/issues |
| License: | MIT + file LICENSE |
| URL: | https://www.reconverse.org/incidence2/, https://github.com/reconverse/incidence2 |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| In views: | Epidemiology |
| CRAN checks: | incidence2 results |
Documentation:
| Reference manual: | incidence2.pdf |
| Vignettes: |
An introduction to incidence2 (source, R code) |
Downloads:
| Package source: | incidence2_2.6.0.tar.gz |
| Windows binaries: | r-devel: incidence2_2.6.0.zip, r-release: incidence2_2.6.0.zip, r-oldrel: incidence2_2.6.0.zip |
| macOS binaries: | r-release (arm64): incidence2_2.6.0.tgz, r-oldrel (arm64): incidence2_2.6.0.tgz, r-release (x86_64): incidence2_2.6.0.tgz, r-oldrel (x86_64): incidence2_2.6.0.tgz |
| Old sources: | incidence2 archive |
Reverse dependencies:
| Reverse depends: | i2extras |
| Reverse suggests: | cfr |
Linking:
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