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UpSetR: A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets

Creates visualizations of intersecting sets using a novel matrix design, along with visualizations of several common set, element and attribute related tasks (Conway 2017) <doi:10.1093/bioinformatics/btx364>.

Version: 1.4.0
Depends: R (≥ 3.0)
Imports: ggplot2, gridExtra, plyr, utils, stats, methods, grDevices, scales
Suggests: knitr
Published: 2019-05-22
Author: Jake Conway [cre], Nils Gehlenborg [aut]
Maintainer: Jake Conway <jake_conway at hms.harvard.edu>
BugReports: http://github.com/hms-dbmi/UpSetR/issues
License: MIT + file LICENSE
URL: http://github.com/hms-dbmi/UpSetR
NeedsCompilation: no
Materials: README NEWS
CRAN checks: UpSetR results

Documentation:

Reference manual: UpSetR.pdf
Vignettes: Attribute Plots
Basic Usage
Querying the Data
Incorporating Set Metadata

Downloads:

Package source: UpSetR_1.4.0.tar.gz
Windows binaries: r-devel: UpSetR_1.4.0.zip, r-release: UpSetR_1.4.0.zip, r-oldrel: UpSetR_1.4.0.zip
macOS binaries: r-release (arm64): UpSetR_1.4.0.tgz, r-oldrel (arm64): UpSetR_1.4.0.tgz, r-release (x86_64): UpSetR_1.4.0.tgz, r-oldrel (x86_64): UpSetR_1.4.0.tgz
Old sources: UpSetR archive

Reverse dependencies:

Reverse imports: artMS, ASpli, biblioverlap, bulkAnalyseR, dar, DiscoRhythm, iCOBRA, immunarch, ivygapSE, LymphoSeq, MAGAR, MatrixQCvis, mpwR, MultiRNAflow, naniar, plinkQC, PTXQC, QCAcluster, rimu, seqsetvis, TOmicsVis, VennDetail, ViSEAGO
Reverse suggests: ChIPpeakAnno, distinct, GeneSelectR, HMP2Data, mastR, MetaNeighbor, miceFast, MultiAssayExperiment, MungeSumstats, muscat, OmicNavigator, pcutils, SingleCellMultiModal, smartid, spatialHeatmap, systemPipeShiny, TFutils

Linking:

Please use the canonical form https://CRAN.R-project.org/package=UpSetR to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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