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OmicNavigator: Open-Source Software for 'Omic' Data Analysis and Visualization

A tool for interactive exploration of the results from 'omics' experiments to facilitate novel discoveries from high-throughput biology. The software includes R functions for the 'bioinformatician' to deposit study metadata and the outputs from statistical analyses (e.g. differential expression, enrichment). These results are then exported to an interactive JavaScript dashboard that can be interrogated on the user's local machine or deployed online to be explored by collaborators. The dashboard includes 'sortable' tables, interactive plots including network visualization, and fine-grained filtering based on statistical significance.

Version: 1.13.13
Depends: R (≥ 3.2.0)
Imports: data.table (≥ 1.12.4), graphics, jsonlite, stats, tools, utils
Suggests: faviconPlease, ggplot2, opencpu, plotly, tinytest (≥ 1.2.3), ttdo (≥ 0.0.6), UpSetR
Published: 2023-08-25
DOI: 10.32614/CRAN.package.OmicNavigator
Author: Terrence Ernst [aut] (Web application), John Blischak ORCID iD [aut, cre], Paul Nordlund [aut] (Web application), Justin Moore [aut] (UpSet-related functions and web application), Joe Dalen [aut] (Barcode functionality and web application), Akshay Bhamidipati [aut] (Web application), Brett Engelmann [aut], Marco Curado [aut] (Improved plotting capabilities), Joe LoGrasso [aut] (Support for plotly), AbbVie Inc. [cph, fnd]
Maintainer: John Blischak <jdblischak at gmail.com>
BugReports: https://github.com/abbvie-external/OmicNavigator/issues
License: MIT + file LICENSE
URL: https://github.com/abbvie-external/OmicNavigator
NeedsCompilation: no
Materials: README NEWS
In views: Omics
CRAN checks: OmicNavigator results

Documentation:

Reference manual: OmicNavigator.pdf
Vignettes: OmicNavigator API
OmicNavigator User's Guide

Downloads:

Package source: OmicNavigator_1.13.13.tar.gz
Windows binaries: r-devel: OmicNavigator_1.13.13.zip, r-release: OmicNavigator_1.13.13.zip, r-oldrel: OmicNavigator_1.13.13.zip
macOS binaries: r-release (arm64): OmicNavigator_1.13.13.tgz, r-oldrel (arm64): OmicNavigator_1.13.13.tgz, r-release (x86_64): OmicNavigator_1.13.13.tgz, r-oldrel (x86_64): OmicNavigator_1.13.13.tgz
Old sources: OmicNavigator archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=OmicNavigator to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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