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Provides functions and a Shiny application for downloading, analyzing and visualizing datasets from UCSC Xena (<http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
Version: | 2.1.0 |
Depends: | R (≥ 3.5) |
Imports: | digest, dplyr (≥ 0.8.3), ezcox, forcats, ggplot2 (≥ 3.2.0), ggpubr (≥ 0.2), httr, magrittr (≥ 1.5), ppcor, psych, purrr, rlang, shiny (≥ 1.3.2), stats, stringr, tibble (≥ 2.1.3), tidyr, UCSCXenaTools, utils |
Suggests: | covr (≥ 3.2.1), cowplot, DT (≥ 0.5), furrr, future, ggrepel, ggstatsplot, knitr, pacman, plotly, plyr, RColorBrewer (≥ 1.1.2), rmarkdown, Rtsne, scales, survival, survminer, testthat (≥ 2.0.1), umap |
Published: | 2024-05-15 |
DOI: | 10.32614/CRAN.package.UCSCXenaShiny |
Author: | Shixiang Wang |
Maintainer: | Shixiang Wang <w_shixiang at 163.com> |
BugReports: | https://github.com/openbiox/UCSCXenaShiny/issues |
License: | GPL (≥ 3) |
URL: | https://github.com/openbiox/UCSCXenaShiny, https://openbiox.github.io/UCSCXenaShiny/ |
NeedsCompilation: | no |
Materials: | README NEWS |
CRAN checks: | UCSCXenaShiny results |
Reference manual: | UCSCXenaShiny.pdf |
Vignettes: |
Accessible Functions |
Package source: | UCSCXenaShiny_2.1.0.tar.gz |
Windows binaries: | r-devel: UCSCXenaShiny_2.1.0.zip, r-release: UCSCXenaShiny_2.1.0.zip, r-oldrel: UCSCXenaShiny_2.1.0.zip |
macOS binaries: | r-release (arm64): UCSCXenaShiny_2.1.0.tgz, r-oldrel (arm64): UCSCXenaShiny_2.1.0.tgz, r-release (x86_64): UCSCXenaShiny_2.1.0.tgz, r-oldrel (x86_64): UCSCXenaShiny_2.1.0.tgz |
Old sources: | UCSCXenaShiny archive |
Please use the canonical form https://CRAN.R-project.org/package=UCSCXenaShiny to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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