Provides functions and a Shiny application for downloading,
analyzing and visualizing datasets from UCSC Xena
(<http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public
databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
| Version: |
2.1.0 |
| Depends: |
R (≥ 3.5) |
| Imports: |
digest, dplyr (≥ 0.8.3), ezcox, forcats, ggplot2 (≥ 3.2.0), ggpubr (≥ 0.2), httr, magrittr (≥ 1.5), ppcor, psych, purrr, rlang, shiny (≥ 1.3.2), stats, stringr, tibble (≥ 2.1.3), tidyr, UCSCXenaTools, utils |
| Suggests: |
covr (≥ 3.2.1), cowplot, DT (≥ 0.5), furrr, future, ggrepel, ggstatsplot, knitr, pacman, plotly, plyr, RColorBrewer (≥ 1.1.2), rmarkdown, Rtsne, scales, survival, survminer, testthat (≥ 2.0.1), umap |
| Published: |
2024-05-15 |
| DOI: |
10.32614/CRAN.package.UCSCXenaShiny |
| Author: |
Shixiang Wang 
[aut, cre],
Shensuo Li [aut],
Yi Xiong [aut],
Longfei Zhao
[aut],
Kai Gu [aut],
Yin Li [aut],
Fei Zhao [aut] |
| Maintainer: |
Shixiang Wang <w_shixiang at 163.com> |
| BugReports: |
https://github.com/openbiox/UCSCXenaShiny/issues |
| License: |
GPL (≥ 3) |
| URL: |
https://github.com/openbiox/UCSCXenaShiny,
https://openbiox.github.io/UCSCXenaShiny/ |
| NeedsCompilation: |
no |
| Materials: |
README NEWS |
| CRAN checks: |
UCSCXenaShiny results |