The hardware and bandwidth for this mirror is donated by dogado GmbH, the Webhosting and Full Service-Cloud Provider. Check out our Wordpress Tutorial.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]dogado.de.

UCSCXenaShiny: Interactive Analysis of UCSC Xena Data

Provides functions and a Shiny application for downloading, analyzing and visualizing datasets from UCSC Xena (<http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.

Version: 2.1.0
Depends: R (≥ 3.5)
Imports: digest, dplyr (≥ 0.8.3), ezcox, forcats, ggplot2 (≥ 3.2.0), ggpubr (≥ 0.2), httr, magrittr (≥ 1.5), ppcor, psych, purrr, rlang, shiny (≥ 1.3.2), stats, stringr, tibble (≥ 2.1.3), tidyr, UCSCXenaTools, utils
Suggests: covr (≥ 3.2.1), cowplot, DT (≥ 0.5), furrr, future, ggrepel, ggstatsplot, knitr, pacman, plotly, plyr, RColorBrewer (≥ 1.1.2), rmarkdown, Rtsne, scales, survival, survminer, testthat (≥ 2.0.1), umap
Published: 2024-05-15
DOI: 10.32614/CRAN.package.UCSCXenaShiny
Author: Shixiang Wang ORCID iD [aut, cre], Shensuo Li [aut], Yi Xiong ORCID iD [aut], Longfei Zhao ORCID iD [aut], Kai Gu ORCID iD [aut], Yin Li [aut], Fei Zhao [aut]
Maintainer: Shixiang Wang <w_shixiang at 163.com>
BugReports: https://github.com/openbiox/UCSCXenaShiny/issues
License: GPL (≥ 3)
URL: https://github.com/openbiox/UCSCXenaShiny, https://openbiox.github.io/UCSCXenaShiny/
NeedsCompilation: no
Materials: README NEWS
CRAN checks: UCSCXenaShiny results

Documentation:

Reference manual: UCSCXenaShiny.pdf
Vignettes: Accessible Functions

Downloads:

Package source: UCSCXenaShiny_2.1.0.tar.gz
Windows binaries: r-devel: UCSCXenaShiny_2.1.0.zip, r-release: UCSCXenaShiny_2.1.0.zip, r-oldrel: UCSCXenaShiny_2.1.0.zip
macOS binaries: r-release (arm64): UCSCXenaShiny_2.1.0.tgz, r-oldrel (arm64): UCSCXenaShiny_2.1.0.tgz, r-release (x86_64): UCSCXenaShiny_2.1.0.tgz, r-oldrel (x86_64): UCSCXenaShiny_2.1.0.tgz
Old sources: UCSCXenaShiny archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=UCSCXenaShiny to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
Health stats visible at Monitor.