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Perform optimal transport on somatic point mutations and kernel regression hypothesis testing by integrating pathway level similarities at the gene level (Little et al. (2023) <doi:10.1111/biom.13769>). The software implements balanced and unbalanced optimal transport and omnibus tests with 'C++' across a set of tumor samples and allows for multi-threading to decrease computational runtime.
| Version: | 1.0.0 |
| Imports: | Rcpp, smarter, ggplot2, survival, MiRKAT |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | rmarkdown, knitr, reshape2, ggdendro |
| Published: | 2025-03-06 |
| DOI: | 10.32614/CRAN.package.ROKET |
| Author: | Paul Little [aut, cre] |
| Maintainer: | Paul Little <pllittle321 at gmail.com> |
| License: | GPL (≥ 3) |
| NeedsCompilation: | yes |
| Citation: | ROKET citation info |
| CRAN checks: | ROKET results |
| Reference manual: | ROKET.pdf |
| Vignettes: |
test (source, R code) |
| Package source: | ROKET_1.0.0.tar.gz |
| Windows binaries: | r-devel: ROKET_1.0.0.zip, r-release: ROKET_1.0.0.zip, r-oldrel: ROKET_1.0.0.zip |
| macOS binaries: | r-devel (arm64): ROKET_1.0.0.tgz, r-release (arm64): ROKET_1.0.0.tgz, r-oldrel (arm64): ROKET_1.0.0.tgz, r-devel (x86_64): ROKET_1.0.0.tgz, r-release (x86_64): ROKET_1.0.0.tgz, r-oldrel (x86_64): ROKET_1.0.0.tgz |
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These binaries (installable software) and packages are in development.
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