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Handle data from evolve and resequence experiments. Measured allele frequencies (e.g., from variants called from high-throughput sequencing data) are compared using an update of the PsiSeq algorithm (Earley, Eric and Corbin Jones (2011) <doi:10.1534/genetics.111.129445>). Functions for saving and loading important files are also included, as well as functions for basic data visualization.
| Version: | 1.0.0 |
| Imports: | rtracklayer, GenomicRanges, ggplot2, dplyr, S4Vectors, magrittr, ggbio, withr, utils, patchwork, tidyr, rlang, devtools |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2025-08-20 |
| DOI: | 10.32614/CRAN.package.PopPsiSeqR |
| Author: | Charles Soeder [aut, cre, cph] |
| Maintainer: | Charles Soeder <csoeder at email.unc.edu> |
| BugReports: | https://github.com/csoeder/PopPsiSeqR/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/csoeder/PopPsiSeq, https://github.com/csoeder/PopPsiSeqR |
| NeedsCompilation: | no |
| Materials: | README, NEWS |
| CRAN checks: | PopPsiSeqR results |
| Reference manual: | PopPsiSeqR.html , PopPsiSeqR.pdf |
| Vignettes: |
PopPsiSeq and Helper Functions (source, R code) |
| Package source: | PopPsiSeqR_1.0.0.tar.gz |
| Windows binaries: | r-devel: PopPsiSeqR_1.0.0.zip, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): PopPsiSeqR_1.0.0.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.
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