CRAN Package Check Results for Package PopPsiSeqR

Last updated on 2026-09-03 23:51:03 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.0.2	8.06	173.00	181.06	OK
r-devel-linux-x86_64-debian-gcc	1.0.2	6.71	128.31	135.02	OK
r-devel-linux-x86_64-fedora-clang	1.0.2			127.64	OK
r-devel-linux-x86_64-fedora-gcc	1.0.2			125.94	OK
r-devel-windows-x86_64	1.0.2	14.00	230.00	244.00	ERROR
r-patched-linux-x86_64	1.0.2	6.62	164.74	171.36	OK
r-release-linux-x86_64	1.0.2	8.77	167.63	176.40	OK
r-release-macos-arm64	1.0.2	2.00	47.00	49.00	OK
r-release-macos-x86_64	1.0.2	6.00	250.00	256.00	OK
r-release-windows-x86_64	1.0.2	36.00	221.00	257.00	OK
r-oldrel-macos-arm64	1.0.2			9.00	ERROR
r-oldrel-macos-x86_64	1.0.2			12.00	ERROR
r-oldrel-windows-x86_64	1.0.2	16.00	276.00	292.00	OK

Check Details

Version: 1.0.2
Check: tests
Result: ERROR Running 'testthat.R' [25s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(PopPsiSeqR) > > test_check("PopPsiSeqR") Saving _problems/test-io-6.R Saving _problems/test-io-8.R Saving _problems/test-io-17.R Saving _problems/test-io-22.R Saving _problems/test-io-32.R Saving _problems/test-io-33.R Saving _problems/test-io-35.R Warning: stack imbalance in '<-', 93 then 95 [ FAIL 7 | WARN 3 | SKIP 1 | PASS 5 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • {httr} is not installed. (1): 'test-frqshft.R:8:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-io.R:6:3'): merged allele frequencies can be loaded ────────── Expected `frequencies.bg <- import.freqtbl(merged_frequencies.filename)` not to throw any errors. Actually got a <packageNotFoundError> with message: there is no package called 'httr' ── Error ('test-io.R:8:3'): merged allele frequencies can be loaded ──────────── <objectNotFoundError/error/condition> Error in `eval(code, test_env)`: object 'frequencies.bg' not found Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-io.R:8:3 2. │ └─testthat::quasi_label(enquo(expected), expected.label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─utils::head(frequencies.bg, n = 1) ── Failure ('test-io.R:17:3'): shifted frequencies can be saved ──────────────── Expected `PopPsiSeqR::export.freqshft(shift2save, shift_frequencies.filename)` not to throw any errors. Actually got a <packageNotFoundError> with message: there is no package called 'httr' ── Failure ('test-io.R:22:3'): shifted frequencies can be saved ──────────────── Expected `correct_hashes` to contain all values in `tools::md5sum(shift_frequencies.filename)[[1]]`. Actual: "e37492c5b6b3396449ec70e2ae27862a", "8f3feb89facba1da64e34533b8a0b618" Expected: NA Missing: NA ── Failure ('test-io.R:32:3'): windowed shifts can be loaded ─────────────────── Expected `windowed_shifts.bg <- import.smvshift(windowed_shifts.filename)` not to throw any errors. Actually got a <packageNotFoundError> with message: there is no package called 'httr' ── Failure ('test-io.R:33:3'): windowed shifts can be loaded ─────────────────── Expected `windowed_shifts.bg <- windowed_shifts.bg %>% as.data.frame()` not to throw any errors. Actually got a <objectNotFoundError> with message: object 'windowed_shifts.bg' not found ── Error ('test-io.R:35:3'): windowed shifts can be loaded ───────────────────── <objectNotFoundError/error/condition> Error in `eval(code, test_env)`: object 'windowed_shifts.bg' not found [ FAIL 7 | WARN 3 | SKIP 1 | PASS 5 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Version: 1.0.2
Check: package dependencies
Result: ERROR Package required but not available: ‘ggbio’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64