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Provides functions for hit gene identification and quantification of sgRNA (single-guided RNA) abundances for CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) pooled screen data analysis. Details are in Jeong et al. (2019) <doi:10.1101/gr.245571.118> and Baggerly et al. (2003) <doi:10.1093/bioinformatics/btg173>.
| Version: | 1.3.4 |
| Depends: | R (≥ 3.5.0) |
| Imports: | Rcpp (≥ 0.12.16), metap, magrittr, dplyr, tibble, stringr, ggplot2, tidyr, glue, pheatmap, tools, readr, parallel, R.utils |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | testthat, knitr, rmarkdown |
| Published: | 2020-07-24 |
| DOI: | 10.32614/CRAN.package.CB2 |
| Author: | Hyun-Hwan Jeong [aut, cre] |
| Maintainer: | Hyun-Hwan Jeong <jeong.hyunhwan at gmail.com> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | yes |
| Materials: | README |
| In views: | Omics |
| CRAN checks: | CB2 results |
| Reference manual: | CB2.pdf |
| Vignettes: |
Handling the input matrix in CB2 CB2 Tutorial |
| Package source: | CB2_1.3.4.tar.gz |
| Windows binaries: | r-devel: CB2_1.3.4.zip, r-release: CB2_1.3.4.zip, r-oldrel: CB2_1.3.4.zip |
| macOS binaries: | r-release (arm64): CB2_1.3.4.tgz, r-oldrel (arm64): CB2_1.3.4.tgz, r-release (x86_64): CB2_1.3.4.tgz, r-oldrel (x86_64): CB2_1.3.4.tgz |
| Old sources: | CB2 archive |
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These binaries (installable software) and packages are in development.
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