CRAN Package Check Results for Package scregclust

Last updated on 2025-07-29 07:49:57 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.2.0	54.71	153.69	208.40	NOTE
r-devel-linux-x86_64-debian-gcc	0.2.2	40.85	66.97	107.82	OK
r-devel-linux-x86_64-fedora-clang	0.2.2			228.30	OK
r-devel-linux-x86_64-fedora-gcc	0.2.2			226.02	OK
r-devel-windows-x86_64	0.2.2	52.00	113.00	165.00	OK
r-patched-linux-x86_64	0.2.0	54.40	152.84	207.24	NOTE
r-release-linux-x86_64	0.2.1	56.02	163.74	219.76	ERROR
r-release-macos-arm64	0.2.2			63.00	OK
r-release-macos-x86_64	0.2.2			106.00	OK
r-release-windows-x86_64	0.2.2	55.00	130.00	185.00	OK
r-oldrel-macos-arm64	0.2.2			72.00	NOTE
r-oldrel-macos-x86_64	0.2.2			105.00	NOTE
r-oldrel-windows-x86_64	0.2.2	52.00	138.00	190.00	OK

Check Details

Version: 0.2.0
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘plotting.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64

Version: 0.2.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘mouse.Rmd’ using rmarkdown trying URL 'https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSE60361&format=file&file=GSE60361%5FC1%2D3005%2DExpression%2Etxt%2Egz' Content type 'text/html' length 13683 bytes (13 KB) ================================================== downloaded 13 KB Quitting from mouse.Rmd:38-77 [load-data] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `open.connection()`: ! cannot open the connection --- Backtrace: ▆ 1. └─GEOquery::getGEO("GSE60361") 2. └─GEOquery:::getAndParseGSEMatrices(...) 3. └─GEOquery:::getDirListing(sprintf(gdsurl, stub, GEO)) 4. ├─xml2::read_html(url) 5. └─xml2:::read_html.default(url) 6. ├─base::suppressWarnings(...) 7. │ └─base::withCallingHandlers(...) 8. ├─xml2::read_xml(x, encoding = encoding, ..., as_html = TRUE, options = options) 9. └─xml2:::read_xml.character(...) 10. └─xml2:::read_xml.connection(...) 11. ├─base::open(x, "rb") 12. └─base::open.connection(x, "rb") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'mouse.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘mouse.Rmd’ --- re-building ‘pbmc.Rmd’ using rmarkdown trying URL 'https://cf.10xgenomics.com/samples/cell-arc/2.0.0/pbmc_granulocyte_sorted_3k/pbmc_granulocyte_sorted_3k_filtered_feature_bc_matrix.h5' Content type 'binary/octet-stream' length 38844318 bytes (37.0 MB) ================================================== downloaded 37.0 MB | | | 0% | |========= | 12% | |================== | 25% | |========================== | 38% | |=================================== | 50% | |============================================ | 62% | |==================================================== | 75% | |============================================================= | 88% | |======================================================================| 100% trying URL 'https://github.com/scmethods/scregclust/raw/main/datasets/pbmc_scregclust.rds' Content type 'application/octet-stream' length 15045381 bytes (14.3 MB) ================================================== downloaded 14.3 MB --- finished re-building ‘pbmc.Rmd’ SUMMARY: processing the following file failed: ‘mouse.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64

Version: 0.2.2
Check: installed package size
Result: NOTE installed size is 20.7Mb sub-directories of 1Mb or more: libs 20.2Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64